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Ligand clusters for UniProt code Q00001

Ligand clusters for Q00001: Rhamnogalacturonase A from Aspergillus aculeatus

Top 6 (of 12) ligand clusters
Cluster 1.
2 ligand types
2 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
2 ligand types
4 ligands
Cluster 4.
1 ligand type
3 ligands
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
2 ligands
Representative protein: 1rmgA  
JSmol
 

Structures

PDB   Schematic diagram
1rmgA    

 

 Cluster 1 contains 2 ligand types

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Ligand Description


 
1. Ligand: MAN × 1
Alpha-D-Mannopyranose
PDB code: 1rmg(A).


 
2. Ligand: NAG-NAG-BMA-MAN-BMA × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB code: 1rmg(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: NAG-NAG-BMA × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose.
PDB code: 1rmg(A).

 

 Cluster 3 contains 2 ligand types

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Ligand Description


 
1. Ligand: BMA × 2
Beta-D-Mannopyranose
PDB codes: 1rmg(A),


 
2. Ligand: MAN × 2
Alpha-D-Mannopyranose
PDB codes: 1rmg(A),

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: MAN × 3
Alpha-D-Mannopyranose
PDB codes: 1rmg(A),

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: MAN × 1
Alpha-D-Mannopyranose
PDB code: 1rmg(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: MAN × 2
Alpha-D-Mannopyranose
PDB codes: 1rmg(A),

 

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