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EBI
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Structure Databases
PDBsum
Ligand clusters for UniProt code P9WHJ3
Ligand clusters for P9WHJ3: Protein RecA from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Top 6 (of 14) ligand clusters
Cluster 1.
7 ligand types
24 ligands
Cluster 2.
2 ligand types
6 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
8 ligands
Cluster 5.
1 ligand type
2 ligands
Cluster 6.
1 ligand type
3 ligands
Representative protein: 1mo4A
Structures
PDB
Schematic diagram
1mo4
A
1g19
A
4ppq
A
4ppg
A
4psk
A
more ...
Cluster 1 contains 7 ligand types
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Ligand
Description
1. Ligand:
GOL × 11
glycerin
Glycerol
PDB codes:
4oqf
(A),
4po1
(A),
4po8
(A),
4po9
(A),
4poa
(A),
4pqf
(A),
4pqr
(A),
4pqy
(A),
4pr0
(A),
4psa
(A),
4ptl
(A).
2. Ligand:
FLC × 4
Citrate anion
PDB codes:
4ppf
(A),
4ppg
(A),
4ppn
(A),
4ppq
(A).
3. Ligand:
PO4 × 3
Phosphate ion
PDB codes:
1g19
(A),
4psk
(A),
4psv
(A).
4. Ligand:
AGS × 2
Phosphothiophosphoric acid-Adenylate ester
PDB codes:
1mo4
(A),
1mo5
(A).
5. Ligand:
EDO × 2
1,2-Ethanediol
PDB codes:
4ppn
(A),
4ppq
(A).
6. Ligand:
ADP × 1
Adenosine-5'-Diphosphate
PDB code:
1mo3
(A).
7. Ligand:
ALF-ADP × 1
ALF
=Tetrafluoroaluminate ion,
ADP
=Adenosine-5'-Diphosphate.
PDB code:
1g18
(A).
Cluster 2 contains 2 ligand types
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Ligand
Description
1. Ligand:
EDO × 5
1,2-Ethanediol
PDB codes:
4oqf
(A),
4po8
(A),
4poa
(A),
4pqf
(A),
4psa
(A).
_Na
2. Metal:
_NA × 1
PDB code:
4ppf
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
4oqf
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
EDO × 8
1,2-Ethanediol
PDB codes:
4po8
(A),
4poa
(A),
4ppf
(A),
4pqr
(A),
4pr0
(A),
4psa
(A),
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
EDO × 2
1,2-Ethanediol
PDB codes:
4po9
(A),
4psa
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
EDO × 3
1,2-Ethanediol
PDB codes:
4po9
(A),
4ppf
(A),
4psa
(A).