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Ligand clusters for UniProt code P68400

Ligand clusters for P68400: Casein kinase II subunit alpha from Homo sapiens

5 ligand clusters
Cluster 1.
3 ligand types
9 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
6 ligands
Representative protein: 6yzhA  
JSmol
 

Structures

PDB   Schematic diagram
6yzhA    
3taxB    
3pe4B    
4gyyB    
4gywB    
 more ...

 

 Cluster 1 contains 3 ligand types

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Ligand Description


 
1. Ligand: UDP × 7
Uridine-5'-Diphosphate
PDB codes: 3pe4(B), 3tax(B), 4gyw(B), 4gz3(B), 5hgv(B), 5vie(B), 5vif(B).


 
2. Ligand: 12V × 1
(2s,3r,4r,5s,6r)-3-(Acetylamino)-4,5-Dihydroxy-6- (Hydroxymethyl)tetrahydro-2h-Thiopyran-2-
Yl [(2r,3s, 4r,5r)-5-(2,4-Dioxo-3,4-Dihydropyrimidin-1(2h)-Yl)-3, 4-Dihydroxytetrahydrofuran-2-
Yl]methyl dihydrogen diphosphate
PDB code: 4gyy(B).


 
3. Ligand: HQV × 1
(2s,3r,4r,5s,6r)-3-[(2e)-But-2-Enoylamino]-4,5- Dihydroxy-6-(Hydroxymethyl)tetrahydro-2h-Thiopyran-
2- Yl [(2r,3s,4r,5r)-5-(2,4-Dioxo-3,4-Dihydropyrimidin- 1(2h)-Yl)-3,4-Dihydroxytetrahydrofuran-2-
Yl]methyl dihydrogen diphosphate (non-Preferred name)
PDB code: 6e37(B).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: ALA-ALA-ARG-LEU-TYR-GLY-PHE-LYS-Q2E-ALA × 1
Q2E=(2~{s})-2-Azanyl-3-(2-Methylsulfanyl-1~{h}-Indol-3-Yl) propanal.
PDB code: 6yzh(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: ADP × 1
Adenosine-5'-Diphosphate
PDB code: 6yzh(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 6yzh(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 6
Sulfate ion
PDB codes: 3pe4(B), 3tax(B), 4gyw(B), 4gyy(B), 4gz3(B), 5hgv(B).

 

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