Ligand clusters for UniProt code P39476

Ligand clusters for P39476: DNA-binding protein 7d from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)

		3 ligand clusters Cluster 1. 6 ligand types 16 ligands Cluster 2. 3 ligand types 6 ligands Cluster 3. 1 ligand type 1 ligand
Representative protein: 5b0lB

Structures

PDB		Schematic diagram
5b0lB
5b0kB
5b03B
5b0iB
6j8vD
		more ...

Cluster 1 contains 6 ligand types

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file. Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: BNG × 4 Nonyl beta-D-Glucopyranoside PDB codes: 5b0l(A),
		2. Ligand: DMU × 4 Decyl-Beta-D-Maltopyranoside PDB codes: 5b0k(A),
		3. Ligand: BOG × 3 Octyl beta-D-Glucopyranoside PDB codes: 5b0i(A),
		4. Ligand: C0X × 2 (2s)-3-Dimethoxyphosphoryloxy-2-[(2e,6e)-3,7,11- Trimethyldodeca-2,6,10-Trienoxy]propanoic acid PDB codes: 6j8w(D),
		5. Ligand: GPP × 2 Geranyl diphosphate PDB codes: 5b03(A),
		6. Ligand: FAR × 1 Farnesyl PDB code: 6j8v(D).

Cluster 2 contains 3 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: BNG × 2 Nonyl beta-D-Glucopyranoside PDB codes: 5b0l(A),
		2. Ligand: BOG × 2 Octyl beta-D-Glucopyranoside PDB codes: 5b0i(A),
		3. Ligand: DMU × 2 Decyl-Beta-D-Maltopyranoside PDB codes: 5b0k(A),

Cluster 3 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: QUW × 1 4-Azanyl-N-[[2,4-Bis(fluoranyl)phenyl]methyl]-1- Oxidanyl-2-Oxidanylidene-6-(5-Oxidanylpentyl)-1,8- Naphthyridine-3-Carboxamide PDB code: 6v3k(D).