Ligand clusters for UniProt code P39086

Ligand clusters for P39086: Glutamate receptor ionotropic, kainate 1 from Homo sapiens

		Top 6 (of 19) ligand clusters Cluster 1. 10 ligand types 14 ligands Cluster 2. 2 ligand types 3 ligands Cluster 3. 2 ligand types 7 ligands Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 5 ligands
Representative protein: 4mf3A

Structures

PDB		Schematic diagram
4mf3A
3fv2A
3fvkA
3fvgA
3fvnA
		more ...

Cluster 1 contains 10 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 3fvo(A).
		2. Ligand: BME × 2 Beta-Mercaptoethanol PDB codes: 2znt(A), 2znu(A).
		3. Ligand: DYH × 2 (2r,3ar,6s,7r,7ar)-2-[(2s)-2-Amino-2-Carboxyethyl]-6- Hydroxy-7-(Methylamino)hexahydro-2h-Furo[3,2- B]pyran- 2-Carboxylic acid PDB codes: 2znt(A), 3fv1(A).
		4. Ligand: GLU × 2 PDB codes: 2zns(A), 3fuz(A).
		5. Ligand: NDZ × 2 (2r,3ar,6r,7r,7ar)-2-[(2s)-2-Amino-2-Carboxyethyl]-6,7- Dihydroxyhexahydro-2h-Furo[3,2-B]pyran-2- Carboxylic acid PDB codes: 2znu(A), 3fv2(A).
		6. Ligand: 8DX × 1 (2r,3ar,6s,7ar)-2-[(2s)-2-Amino-3-Hydroxy-3-Oxo- Propyl]-6-Hydroxy-3,3a,5,6,7,7a-Hexahydrofuro[4,5- B]pyran-2-Carboxylic acid PDB code: 3fvk(A).
		7. Ligand: 8EP × 1 (2r,3ar,6r,7s,7ar)-2-[(2s)-2-Amino-3-Hydroxy-3-Oxo- Propyl]-6,7-Dihydroxy-3,3a,5,6,7,7a- Hexahydrofuro[4,5- B]pyran-2-Carboxylic acid PDB code: 3fvo(A).
		8. Ligand: 9DX × 1 (2r,3ar,7r,7ar)-2-[(2s)-2-Amino-3-Hydroxy-3-Oxo- Propyl]-7-Hydroxy-3,3a,5,6,7,7a-Hexahydrofuro[4,5- B]pyran-2-Carboxylic acid PDB code: 3fvn(A).
		9. Ligand: MS8 × 1 (2r,3ar,7ar)-2-[(2s)-2-Amino-3-Hydroxy-3-Oxo-Propyl]-3, 3a,5,6,7,7a-Hexahydrofuro[4,5-B]pyran-2- Carboxylic acid PDB code: 3fvg(A).
		10. Ligand: SXI × 1 (3s,4as,6s,8ar)-6-[3-Chloro-2-(1h-Tetrazol-5-Yl) phenoxy]decahydroisoquinoline-3-Carboxylic acid PDB code: 4mf3(A).

Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 3fv2(A), 3fvk(A).
		2. Ligand: SO4 × 1 Sulfate ion PDB code: 3fv1(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 5 glycerin Glycerol PDB codes: 3fv2(A), 3fvg(A), 3fvk(A), 3fvn(A), 3fvo(A).
		2. Ligand: BME × 2 Beta-Mercaptoethanol PDB codes: 2znt(A), 2znu(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 3fv2(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 3fv2(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 5 glycerin Glycerol PDB codes: 3fv2(A), 3fvg(A), 3fvk(A), 3fvn(A), 3fvo(A).