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Ligand clusters for UniProt code P38489

Ligand clusters for P38489: Oxygen-insensitive NAD(P)H nitroreductase from Escherichia coli (strain K12)

3 ligand clusters
Cluster 1.
7 ligand types
23 ligands
Cluster 2.
6 ligand types
20 ligands
Cluster 3.
1 ligand type
1 ligand
Representative protein: 1ds7A  
JSmol
 

Structures

PDB   Schematic diagram
1ds7A    
1ykiA    
1ooqA    
3x21A    
1yluA    
 more ...

 

 Cluster 1 contains 7 ligand types

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Ligand Description


 
1. Ligand: FMN × 14
flavin mononucleotide
Flavin mononucleotide
PDB codes: 1ds7(A), 1icr(A), 1icu(A), 1icv(A), 1idt(A), 1oo5(A), 1oo6(A), 1oon(A), 1ooq(A), 1yki(A), 1ylr(A), 1ylu(A), 3x21(A), 3x22(A).


 
2. Ligand: NIO × 3
niacin
Nicotinic acid
PDB codes: 1icr(A), 1icu(A), 1icv(A).


 
3. Ligand: NFZ × 1
nitrofural
Nitrofurazone
PDB code: 1yki(A).


 
4. Ligand: CB1 × 1
5-(Aziridin-1-Yl)-2,4-Dinitrobenzamide
PDB code: 1idt(A).


 
5. Ligand: SN2 × 1
5-[Bis-2(chloro-Ethyl)-Amino]-2,4-Dintro-Benzamide
PDB code: 1oo6(A).


 
6. Ligand: BEL × 1
2,4-Dinitro,5-[Bis(2-Bromoethyl)amino]-N-(2',3'- Dioxopropyl)benzamide
PDB code: 1oon(A).


 
7. Ligand: ACT × 2
Acetate ion
PDB codes: 1ylr(A), 1ylu(A).

 

 Cluster 2 contains 6 ligand types

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Ligand Description


 
1. Ligand: FMN × 14
flavin mononucleotide
Flavin mononucleotide
PDB codes: 1ds7(A), 1icr(A), 1icu(A), 1icv(A), 1idt(A), 1oo5(A), 1oo6(A), 1oon(A), 1ooq(A), 1yki(A), 1ylr(A), 1ylu(A), 3x21(A), 3x22(A).


 
2. Ligand: NIO × 2
niacin
Nicotinic acid
PDB codes: 1icu(A), 1icv(A).


 
3. Ligand: NFZ × 1
nitrofural
Nitrofurazone
PDB code: 1yki(A).


 
4. Ligand: CB1 × 1
5-(Aziridin-1-Yl)-2,4-Dinitrobenzamide
PDB code: 1idt(A).


 
5. Ligand: SN2 × 1
5-[Bis-2(chloro-Ethyl)-Amino]-2,4-Dintro-Benzamide
PDB code: 1oo6(A).


 
6. Ligand: DTC × 1
Bishydroxy[2h-1-Benzopyran-2-One,1,2-Benzopyrone]
PDB code: 1ooq(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: ACT × 1
Acetate ion
PDB code: 1ylu(A).

 

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