Ligand clusters for UniProt code P28074

Ligand clusters for P28074: Proteasome subunit beta type-5 from Homo sapiens

		Top 6 (of 7) ligand clusters Cluster 1. 17 ligand types 27 ligands Cluster 2. 1 ligand type 9 ligands Cluster 3. 1 ligand type 19 ligands Cluster 4. 1 ligand type 8 ligands Cluster 5. 1 ligand type 5 ligands Cluster 6. 1 ligand type 7 ligands
Representative protein: 5l5wK

Structures

PDB		Schematic diagram
5l5wK
5lezK
5lf4K
5lf7K
5lf3K
		more ...

Cluster 1 contains 17 ligand types

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Ligand		Description
		1. Ligand: BO2 × 2 bortezomib N-[(1r)-1-(Dihydroxyboryl)-3-Methylbutyl]-N-(Pyrazin-2- Ylcarbonyl)-L-Phenylalaninamide PDB codes: 5l5z(K), 5lf3(K).
		2. Ligand: 3BV × 1 carfilzomib N-{(2s)-2-[(Morpholin-4-Ylacetyl)amino]-4- Phenylbutanoyl}-L-Leucyl-N-[(2r,3s,4s)-1,3-Dihydroxy- 2,6-Dimethylheptan-4-Yl]-L-Phenylalaninamide PDB code: 5l5y(K).
		3. Ligand: 6V8 × 1 ixazomib [(1~{r})-1-[2-[[2,5-Bis(chloranyl) phenyl]carbonylamino]ethanoylamino]-3-Methyl- Butyl]boronic acid PDB code: 5lf7(K).
		4. Ligand: MES × 7 2-(N-Morpholino)-Ethanesulfonic acid PDB codes: 5l5x(K), 5l5y(K), 5l60(K), 5l61(K), 5l62(K), 5l63(K), 5l64(K).
		5. Ligand: 04C × 2 1,2,4-Trideoxy-4-Methyl-2-{[N-(Morpholin-4-Ylacetyl)-L- Alanyl-O-Methyl-L-Tyrosyl]amino}-1-Phenyl- D-Xylitol PDB codes: 5l5x(K), 5l63(K).
		6. Ligand: 6V9-OAS-OAS-6VA × 2 6V9=2-Methyl-1,3-Thiazole-5-Carboxylic acid, OAS=O-Acetylserine, 6VA=(3~{r},4~{s})-4-Azanyl-2-Methyl-5-Phenyl-Pentane-2,3- Diol. PDB codes: 5ley(K), 5lez(K).
_Cl		7. Metal: _CL × 2 PDB codes: 5ley(K), 5lf1(K).
		8. Ligand: 39V × 1 N-[(3-Methyl-1h-Inden-2-Yl)carbonyl]-D-Alanyl-N-[(2s, 4r)-5-Hydroxy-4-Methyl-3-Oxo-1-Phenylpentan- 2-Yl]-L- Tryptophanamide PDB code: 5l60(K).
		9. Ligand: 6N5 × 1 ~{N}-[(2~{s})-1-[[(2~{s})-3-(4-Methoxyphenyl)-1- [[(2~{s},3~{s},4~{r})-4-Methyl-3,5-Bis(oxidanyl)- 1- Phenyl-Pentan-2-Yl]amino]-1-Oxidanylidene-Propan-2- Yl]amino]-1-Oxidanylidene-Propan-2-Yl]-1- Methyl-5~{h}- Indene-2-Carboxamide PDB code: 5l61(K).
		10. Ligand: 6NV × 1 ~{N}-[(2~{r})-1-[[(2~{s})-3-(4-Methoxyphenyl)-1- [[(2~{s},3~{s},4~{r})-4-Methyl-3,5-Bis(oxidanyl)- 1- Phenyl-Pentan-2-Yl]amino]-1-Oxidanylidene-Propan-2- Yl]amino]-1-Oxidanylidene-Propan-2-Yl]-1- Methyl-5~{h}- Indene-2-Carboxamide PDB code: 5l64(K).
		11. Ligand: 6V7 × 1 [(1~{r})-3-Methyl-1-[[(2~{s},3~{s})-3-Oxidanyl-2-[(6- Phenylpyridin-2- Yl) carbonylamino]butanoyl]amino]butyl]boronic acid PDB code: 5lf4(K).
		12. Ligand: 6VC × 1 ~{N}-[(2~{s})-1-[[(2~{s},3~{r},4~{s})-2,6-Dimethyl-1,2, 3-Tris(oxidanyl)heptan-4-Yl]amino]-3- Oxidanyl-1- Oxidanylidene-Propan-2-Yl]-6-Methyl-Heptanamide PDB code: 5lf1(K).
		13. Ligand: 79P × 1 (2~{s})-3-(1~{h}-Indol-3-Yl)-~{N}-[(2~{s},3~{s},4~{r})- 4-Methyl-3,5-Bis(oxidanyl)-1-Phenyl-Pentan- 2-Yl]-2- [[(2~{r})-2-(2-Morpholin-4-Ylethanoylamino) propanoyl]amino]propanamide PDB code: 5l62(K).
		14. Ligand: ACE-IML-ILE-THR-6VO × 1 ACE=Acetyl group, IML=N-Methyl-Isoleucine, 6VO=(3~{r},4~{s})-4-Azanyl-2,6-Dimethyl-Heptane-2,3-Diol. PDB code: 5lf0(K).
		15. Ligand: ACT × 1 Acetate ion PDB code: 5lez(K).
		16. Ligand: KNM × 1 Ada-(Ahx)3-(Leu)3-Vinyl sulfone PDB code: 5a0q(L).
		17. Ligand: LEU-LEU-6VF × 1 6VF=(2~{r},3~{s})-3-Azanyl-4-(4-Hydroxyphenyl)butane-1,2- Diol. PDB code: 5lf6(K).

Cluster 2 contains 1 ligand type

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Ligand		Description
		1. Ligand: 1PE × 9 Pentaethylene glycol PDB codes: 5le5(K), 5lex(K), 5ley(K), 5lf0(K), 5lf1(K), 5lf3(K), 5lf4(K), 5lf6(K), 5lf7(K).

Cluster 3 contains 1 ligand type

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Ligand		Description
_Mg		1. Metal: _MG × 19 PDB codes: 5l5w(K), 5l5x(K), 5l5y(K), 5l5z(K), 5l60(K), 5l61(K), 5l62(K), 5l63(K), 5l64(K), 5le5(K), 5lex(K), 5ley(K), 5lez(K), 5lf0(K), 5lf1(K), 5lf3(K), 5lf4(K), 5lf6(K), 5lf7(K).

Cluster 4 contains 1 ligand type

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Ligand		Description
_Mg		1. Metal: _MG × 8 PDB codes: 5l5w(K), 5l5y(K), 5l5z(K), 5l60(K), 5l61(K), 5l62(K), 5l63(K), 5l64(K).

Cluster 5 contains 1 ligand type

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Ligand		Description
_Cl		1. Metal: _CL × 5 PDB codes: 5le5(K), 5ley(K), 5lf0(K), 5lf3(K), 5lf4(K).

Cluster 6 contains 1 ligand type

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Ligand		Description
_Cl		1. Metal: _CL × 7 PDB codes: 5le5(K), 5ley(K), 5lf0(K), 5lf1(K), 5lf3(K), 5lf4(K), 5lf7(K).