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Ligand clusters for UniProt code P20062

Ligand clusters for P20062: Transcobalamin-2 from Homo sapiens

Top 6 (of 10) ligand clusters
Cluster 1.
6 ligand types
10 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
2 ligand types
2 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 2bb5A  
JSmol
 

Structures

PDB   Schematic diagram
2bb5A    
4zrpA    
4zrqA    
5nsaA    
5np4A    
 more ...

 

 Cluster 1 contains 6 ligand types

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Ligand Description


 
1. Ligand: CNC × 3
cyanocobalamin
Co-Cyanocobalamin
PDB codes: 4zrp(A), 4zrq(A), 5np4(A).


 
2. Ligand: GOL × 3
glycerin
Glycerol
PDB codes: 4zrp(A), 4zrq(A), 5np4(A).


 
3. Ligand: B12 × 1
Cobalamin
PDB code: 2bb5(A).


 
4. Ligand: B12-8FS × 1
B12=Cobalamin, 8FS=1-Ethynyl-2,4-Difluorobenzene.
PDB code: 5nsa(A).


 
5. Ligand: CBY-CYN × 1
CBY=Cob(ii)inamide, CYN=Cyanide ion.
PDB code: 5nrp(A).

_Ca
 
6. Metal: _CA × 1
PDB code: 4zrp(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: CBY × 1
Cob(ii)inamide
PDB code: 5nrp(A).

 

 Cluster 3 contains 2 ligand types

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 4zrq(A).

_Ca
 
2. Metal: _CA × 1
PDB code: 4zrp(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 4zrp(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 4zrp(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 4zrp(A).

 

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