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EBI
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PDBsum
Ligand clusters for UniProt code P20062
Ligand clusters for P20062: Transcobalamin-2 from Homo sapiens
Top 6 (of 10) ligand clusters
Cluster 1.
6 ligand types
10 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
2 ligand types
2 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 2bb5A
Structures
PDB
Schematic diagram
2bb5
A
4zrp
A
4zrq
A
5nsa
A
5np4
A
more ...
Cluster 1 contains 6 ligand types
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Ligand
Description
1. Ligand:
CNC × 3
cyanocobalamin
Co-Cyanocobalamin
PDB codes:
4zrp
(A),
4zrq
(A),
5np4
(A).
2. Ligand:
GOL × 3
glycerin
Glycerol
PDB codes:
4zrp
(A),
4zrq
(A),
5np4
(A).
3. Ligand:
B12 × 1
Cobalamin
PDB code:
2bb5
(A).
4. Ligand:
B12-8FS × 1
B12
=Cobalamin,
8FS
=1-Ethynyl-2,4-Difluorobenzene.
PDB code:
5nsa
(A).
5. Ligand:
CBY-CYN × 1
CBY
=Cob(ii)inamide,
CYN
=Cyanide ion.
PDB code:
5nrp
(A).
_Ca
6. Metal:
_CA × 1
PDB code:
4zrp
(A).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
CBY × 1
Cob(ii)inamide
PDB code:
5nrp
(A).
Cluster 3 contains 2 ligand types
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
4zrq
(A).
_Ca
2. Metal:
_CA × 1
PDB code:
4zrp
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
4zrp
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
4zrp
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
4zrp
(A).