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Ligand clusters for UniProt code P19909

Ligand clusters for P19909: Immunoglobulin G-binding protein G from Streptococcus sp. group G

Top 6 (of 14) ligand clusters
Cluster 1.
11 ligand types
16 ligands
Cluster 2.
5 ligand types
8 ligands
Cluster 3.
7 ligand types
13 ligands
Cluster 4.
2 ligand types
4 ligands
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
3 ligand types
3 ligands
Representative protein: 4ozaA  
JSmol
 

Structures

PDB   Schematic diagram
4ozaA    
6cheA    
5bmiA    
6nl7A    
6kmcA    
 more ...

 

 Cluster 1 contains 11 ligand types

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Ligand Description


 
1. Ligand: GOL × 2
glycerin
Glycerol
PDB codes: 4ozb(A), 4wh4(A).


 
2. Ligand: IPA × 1
isopropyl alcohol
Isopropyl alcohol
PDB code: 2qmt(A).

_Zn
 
3. Metal: _ZN × 1
PDB code: 6nl6(A).


 
4. Ligand: PO4 × 4
Phosphate ion
PDB codes: 6cpz(A), 6nl7(A),

_Cl
 
5. Metal: _CL × 2
PDB codes: 6nl6(A), 6nla(A).


 
6. Ligand: 2PE × 1
Nonaethylene glycol
PDB code: 3v3x(A).


 
7. Ligand: DPO × 1
Diphosphate
PDB code: 6nl7(A).


 
8. Ligand: MRD × 1
(4r)-2-Methylpentane-2,4-Diol
PDB code: 2qmt(A).


 
9. Ligand: MTN × 1
S-[(1-Oxyl-2,2,5,5-Tetramethyl-2,5-Dihydro-1h-Pyrrol-3- Yl)methyl] methanesulfonothioate
PDB code: 3v3x(A).


 
10. Ligand: SO4 × 1
Sulfate ion
PDB code: 4ozc(A).

_Na
 
11. Metal: _NA × 1
PDB code: 6nl7(A).

 

 Cluster 2 contains 5 ligand types

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Ligand Description


 
1. Ligand: IPA × 1
isopropyl alcohol
Isopropyl alcohol
PDB code: 2qmt(A).

_Zn
 
2. Metal: _ZN × 1
PDB code: 6nl7(A).


 
3. Ligand: MTN × 3
S-[(1-Oxyl-2,2,5,5-Tetramethyl-2,5-Dihydro-1h-Pyrrol-3- Yl)methyl] methanesulfonothioate
PDB codes: 3v3x(A), 5bmh(A), 5bmi(A).


 
4. Ligand: ACT × 2
Acetate ion
PDB codes: 6nl7(A),


 
5. Ligand: MRD × 1
(4r)-2-Methylpentane-2,4-Diol
PDB code: 6cpz(A).

 

 Cluster 3 contains 7 ligand types

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Ligand Description


 
1. Ligand: GOL × 3
glycerin
Glycerol
PDB codes: 4wh4(A), 6nla(A).

_Zn
 
2. Metal: _ZN × 2
PDB codes: 6nl8(A), 6nla(A).

_Cl
 
3. Metal: _CL × 3
PDB codes: 6nl8(A), 6nla(A).


 
4. Ligand: MPD × 2
(4s)-2-Methyl-2,4-Pentanediol
PDB codes: 6c9o(A), 6che(A).


 
5. Ligand: PO4 × 1
Phosphate ion
PDB code: 6cte(A).


 
6. Ligand: SO4 × 1
Sulfate ion
PDB code: 4wh4(A).

_Ca
 
7. Metal: _CA × 1
PDB code: 3fil(A).

 

 Cluster 4 contains 2 ligand types

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Ligand Description


 
1. Ligand: MTN × 3
S-[(1-Oxyl-2,2,5,5-Tetramethyl-2,5-Dihydro-1h-Pyrrol-3- Yl)methyl] methanesulfonothioate
PDB codes: 5bmg(A),


 
2. Ligand: PO4 × 1
Phosphate ion
PDB code: 6cte(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: MTN × 1
S-[(1-Oxyl-2,2,5,5-Tetramethyl-2,5-Dihydro-1h-Pyrrol-3- Yl)methyl] methanesulfonothioate
PDB code: 3v3x(A).

 

 Cluster 6 contains 3 ligand types

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Ligand Description


 
1. Ligand: ACY × 1
acetic acid
Acetic acid
PDB code: 6kmc(A).


 
2. Ligand: PO4 × 1
Phosphate ion
PDB code: 2qmt(A).

_Na
 
3. Metal: _NA × 1
PDB code: 6nla(A).

 

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