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Ligand clusters for UniProt code P0C0V0

Ligand clusters for P0C0V0: Periplasmic serine endoprotease DegP from Escherichia coli (strain K12)

4 ligand clusters
Cluster 1.
5 ligand types
7 ligands
Cluster 2.
5 ligand types
7 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
2 ligands
Representative protein: 3cs0A  
JSmol
 

Structures

PDB   Schematic diagram
3cs0A    
3mh7A    
3ou0A    
3mh6A    
6jjlA    
 more ...

 

 Cluster 1 contains 5 ligand types

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Ligand Description


 
1. Ligand: CYS-TYR-ARG-LYS-LEU × 2
PDB codes: 6jjl(A), 6jjo(A).


 
2. Ligand: UNK-UNK-UNK-UNK-UNK × 2
PDB codes: 3cs0(A), 3mh7(A).


 
3. Ligand: CYS-TYR-TYR-LYS-ILE × 1
PDB code: 6jjk(A).


 
4. Ligand: GLY-ILE-LEU-GLN-ILE × 1
PDB code: 3otp(A).


 
5. Ligand: UNK-UNK-UNK-UNK-UNK-UNK-UNK × 1
PDB code: 3ou0(A).

 

 Cluster 2 contains 5 ligand types

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Ligand Description


 
1. Ligand: CYS-TYR-ARG-LYS-LEU × 2
PDB codes: 6jjl(A), 6jjo(A).


 
2. Ligand: UNK-UNK-UNK-UNK-UNK × 2
PDB codes: 3mh7(A), 3ou0(A).


 
3. Ligand: CYS-TYR-TYR-LYS-ILE × 1
PDB code: 6jjk(A).


 
4. Ligand: DFP × 1
Diisopropyl phosphonate
PDB code: 3mh6(A).


 
5. Ligand: TRP-VAL-SER-ALA-ALA × 1
PDB code: 3otp(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: CYS-TYR-TYR-LYS-ILE × 1
PDB code: 6jjk(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: DFP × 2
Diisopropyl phosphonate
PDB codes: 3mh5(A),

 

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