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EBI
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Ligand clusters for UniProt code P0C0V0
Ligand clusters for P0C0V0: Periplasmic serine endoprotease DegP from Escherichia coli (strain K12)
4 ligand clusters
Cluster 1.
5 ligand types
7 ligands
Cluster 2.
5 ligand types
7 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
2 ligands
Representative protein: 3cs0A
Structures
PDB
Schematic diagram
3cs0
A
3mh7
A
3ou0
A
3mh6
A
6jjl
A
more ...
Cluster 1 contains 5 ligand types
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Ligand
Description
1. Ligand:
CYS-TYR-ARG-LYS-LEU × 2
PDB codes:
6jjl
(A),
6jjo
(A).
2. Ligand:
UNK-UNK-UNK-UNK-UNK × 2
PDB codes:
3cs0
(A),
3mh7
(A).
3. Ligand:
CYS-TYR-TYR-LYS-ILE × 1
PDB code:
6jjk
(A).
4. Ligand:
GLY-ILE-LEU-GLN-ILE × 1
PDB code:
3otp
(A).
5. Ligand:
UNK-UNK-UNK-UNK-UNK-UNK-UNK × 1
PDB code:
3ou0
(A).
Cluster 2 contains 5 ligand types
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Ligand
Description
1. Ligand:
CYS-TYR-ARG-LYS-LEU × 2
PDB codes:
6jjl
(A),
6jjo
(A).
2. Ligand:
UNK-UNK-UNK-UNK-UNK × 2
PDB codes:
3mh7
(A),
3ou0
(A).
3. Ligand:
CYS-TYR-TYR-LYS-ILE × 1
PDB code:
6jjk
(A).
4. Ligand:
DFP × 1
Diisopropyl phosphonate
PDB code:
3mh6
(A).
5. Ligand:
TRP-VAL-SER-ALA-ALA × 1
PDB code:
3otp
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
CYS-TYR-TYR-LYS-ILE × 1
PDB code:
6jjk
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
DFP × 2
Diisopropyl phosphonate
PDB codes:
3mh5
(A),