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EBI
Databases
Structure Databases
PDBsum
Ligand clusters for UniProt code P07288
Ligand clusters for P07288: Prostate-specific antigen OS=Homo sapiens GN=KLK3 PE=1 SV=2
5 ligand clusters
Cluster 1.
4 ligand types
4 ligands
Cluster 2.
2 ligand types
2 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Representative protein: 2psaA
Structures
PDB
Schematic diagram
2psa
A
2zch
P
2zck
P
2zcl
P
3qum
P
Cluster 1 contains 4 ligand types
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Ligand
Description
1. Ligand:
NAG × 1
n-acetylglucosamine
N-Acetyl-D-Glucosamine
PDB code:
2zcl
(P).
2. Ligand:
NAG-MAN × 1
NAG
=N-Acetyl-D-Glucosamine,
MAN
=Alpha-D-Mannose.
PDB code:
2zck
(P).
3. Ligand:
NAG-NAG-MAN-MAN-NAG-GAL-SIA-NAG-GAL-SIA-MAN-NAG-GAL-SIA-FUC × 1
NAG
=N-Acetyl-D-Glucosamine,
MAN
=Alpha-D-Mannose,
GAL
=Beta-D-Galactose,
SIA
=O-Sialic acid,
FUC
=Alpha-L-Fucose.
PDB code:
3qum
(P).
4. Ligand:
NDG × 1
2-(Acetylamino)-2-Deoxy-A-D-Glucopyranose
PDB code:
2zch
(P).
Cluster 2 contains 2 ligand types
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Ligand
Description
1. Ligand:
ACE-SER-SER-TYR-TYR-SER-GLY-NH2 × 1
ACE
=Acetyl group,
NH2
=Amino group.
PDB code:
2psa
(A).
2. Ligand:
LYS-GLY-ILE-SER-SER-GLN-TYR × 1
PDB code:
2zck
(P).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
A2G-GAL × 1
GAL
=Beta-D-Galactose,
A2G
=N-Acetyl-2-Deoxy-2-Amino-Galactose.
PDB code:
3qum
(P).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
PO4 × 1
Phosphate ion
PDB code:
2zch
(P).
Cluster 5 contains 1 ligand type
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Ligand
Description
_Cl
1. Metal:
_CL × 1
PDB code:
2zch
(P).