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EBI
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PDBsum
Ligand clusters for UniProt code P04004
Ligand clusters for P04004: Vitronectin OS=Homo sapiens OX=9606 GN=VTN PE=1 SV=1
Top 6 (of 7) ligand clusters
Cluster 1.
3 ligand types
4 ligands
Cluster 2.
1 ligand type
2 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 6o5eA
Structures
PDB
Schematic diagram
6o5e
A
6o5e
B
Cluster 1 contains 3 ligand types
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Ligand
Description
_Na
1. Metal:
_NA × 2
PDB codes:
6o5e
(A),
2. Ligand:
SO4 × 1
Sulfate ion
PDB code:
6o5e
(B).
_Cl
3. Metal:
_CL × 1
PDB code:
6o5e
(B).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 2
Sulfate ion
PDB codes:
6o5e
(A),
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
IMD × 1
Imidazole
PDB code:
6o5e
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
IMD × 1
Imidazole
PDB code:
6o5e
(B).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
NO3 × 1
Nitrate ion
PDB code:
6o5e
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
NO3 × 1
Nitrate ion
PDB code:
6o5e
(B).