spacer
spacer
EBI Databases Structure Databases PDBsum

Ligand clusters for UniProt code P02788

Ligand clusters for P02788: Lactotransferrin from Homo sapiens

6 ligand clusters
Cluster 1.
5 ligand types
6 ligands
 Cluster 2.
4 ligand types
4 ligands
 Cluster 3.
5 ligand types
13 ligands
 Cluster 4.
1 ligand type
2 ligands
 Cluster 5.
4 ligand types
29 ligands
 Cluster 6.
1 ligand type
1 ligand
Representative protein: 2bjjX  
JSmol
 

Structures

PDB   Schematic diagram
2bjjX    
1lcfA    
1bkaA    
1sqyA    
1fckA    
 more ...

 

 Cluster 1 contains 5 ligand types

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file.
Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: NAG × 2
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB codes: 1lcf(A), 2bjj(X).


 
2. Ligand: NAG-FUC × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose.
PDB code: 1lfg(A).


 
3. Ligand: NAG-NAG × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB code: 1sqy(A).


 
4. Ligand: NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG-FUC × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose, GAL=Beta-D-Galactopyranose, FUC=Alpha-L-Fucopyranose.
PDB code: 1lgb(C).


 
5. Ligand: NAG-NAG-FUL × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUL=Beta-L-Fucopyranose.
PDB code: 1lfi(A).

 

 Cluster 2 contains 4 ligand types

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: NAG × 1
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB code: 2bjj(X).


 
2. Ligand: NAG-FUC × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose.
PDB code: 1lfi(A).


 
3. Ligand: NAG-NAG × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB code: 1sqy(A).


 
4. Ligand: NAG-NAG-FUC × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose.
PDB code: 1lfg(A).

 

 Cluster 3 contains 5 ligand types

Selection shortcuts: select all/none invert selection.
Ligand Description

_Fe
 
1. Metal: _FE × 1
PDB code: 1n76(A).


 
2. Ligand: CO3 × 7
Carbonate ion
PDB codes: 1b0l(A), 1fck(A), 1lfg(A), 1lfi(A), 1n76(A), 1sqy(A), 2bjj(X).


 
3. Ligand: OXL × 2
Oxalate ion
PDB codes: 1bka(A), 1lcf(A).

_Cl
 
4. Metal: _CL × 2
PDB codes: 1cb6(A), 1lfh(A).

_Ce
 
5. Metal: _CE × 1
PDB code: 1fck(A).

 

 Cluster 4 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: DAO × 2
lauric acid
Lauric acid
PDB codes: 2gmc(A), 2gmd(A).

 

 Cluster 5 contains 4 ligand types

Selection shortcuts: select all/none invert selection.
Ligand Description

_Fe
 
1. Metal: _FE × 10
PDB codes: 1dsn(A), 1eh3(A), 1h43(A), 1h44(A), 1h45(A), 1hse(A), 1lct(A), 1n76(A), 1vfd(A), 1vfe(A).


 
2. Ligand: CO3 × 17
Carbonate ion
PDB codes: 1b0l(A), 1dsn(A), 1eh3(A), 1fck(A), 1h43(A), 1h44(A), 1h45(A), 1hse(A), 1lcf(A), 1lct(A), 1lfg(A), 1lfi(A), 1n76(A), 1sqy(A), 1vfd(A), 1vfe(A), 2bjj(X).


 
3. Ligand: OXL × 1
Oxalate ion
PDB code: 1bka(A).

_Ce
 
4. Metal: _CE × 1
PDB code: 1fck(A).

 

 Cluster 6 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand Description

_Na
 
1. Metal: _NA × 1
PDB code: 1n76(A).

 

spacer
spacer