Ligand clusters for UniProt code P00747

Ligand clusters for P00747: Plasminogen from Homo sapiens

		Top 6 (of 21) ligand clusters Cluster 1. 4 ligand types 4 ligands Cluster 2. 2 ligand types 2 ligands Cluster 3. 4 ligand types 5 ligands Cluster 4. 2 ligand types 2 ligands Cluster 5. 2 ligand types 3 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 4a5tS

Structures

PDB		Schematic diagram
4a5tS
4durA
1ki0A
2dohX
1l4dA
		more ...

Cluster 1 contains 4 ligand types

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file. Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 6d3y(A).
		2. Ligand: 0GJ × 1 L-Alpha-Glutamyl-N-{(1s)-4-{[Amino(iminio) methyl]amino}-1-[(1s)-2-Chloro-1- Hydroxyethyl]butyl}glycinamide PDB code: 1bui(A).
		3. Ligand: 89M × 1 Nalpha-[Trans-4-(Aminomethyl)cyclohexane-1-Carbonyl]-N- Octyl-O-[(Quinolin-2-Yl)methyl]-L- Tyrosinamide PDB code: 5ugg(A).
		4. Ligand: 89S × 1 Nalpha-[Trans-4-(Aminomethyl)cyclohexane-1-Carbonyl]-N- Octyl-O-[(Pyridin-4-Yl)methyl]-L- Tyrosinamide PDB code: 5ugd(A).

Cluster 2 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: NAG-GAL-SIA × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, GAL=Beta-D-Galactopyranose, SIA=N-Acetyl-Alpha-Neuraminic acid. PDB code: 4dur(A).
		2. Ligand: NGA-GAL-SIA × 1 NGA=2-Acetamido-2-Deoxy-Beta-D-Galactopyranose, GAL=Beta-D-Galactopyranose, SIA=N-Acetyl-Alpha-Neuraminic acid. PDB code: 4a5t(S).

Cluster 3 contains 4 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: ACA × 2 aminocaproic acid 6-Aminohexanoic acid PDB codes: 1cea(A), 1hpk(A).
		2. Ligand: AMH × 1 tranexamic acid Trans-4-Aminomethylcyclohexane-1-Carboxylic acid PDB code: 1ceb(A).
		3. Ligand: ACT × 1 Acetate ion PDB code: 4dur(A).
		4. Ligand: XO3 × 1 5-[(2r,4s)-2-(Phenylmethyl)piperidin-4-Yl]-1, 2-Oxazol-3-One PDB code: 4cik(A).

Cluster 4 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: AMH × 1 tranexamic acid Trans-4-Aminomethylcyclohexane-1-Carboxylic acid PDB code: 1b2i(A).
		2. Ligand: BCN × 1 Bicine PDB code: 1ki0(A).

Cluster 5 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: ACA × 1 aminocaproic acid 6-Aminohexanoic acid PDB code: 2pk4(A).
		2. Ligand: SO4 × 2 Sulfate ion PDB codes: 1krn(A), 1pk4(A).

Cluster 6 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: BCN × 1 Bicine PDB code: 1ki0(A).