Ligand clusters for UniProt code P00669

Ligand clusters for P00669: Seminal ribonuclease OS=Bos taurus OX=9913 GN=SRN PE=1 SV=2

		6 ligand clusters Cluster 1. 13 ligand types 24 ligands Cluster 2. 8 ligand types 12 ligands Cluster 3. 2 ligand types 2 ligands Cluster 4. 1 ligand type 2 ligands Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 1 ligand
Representative protein: 11baA

Structures

PDB		Schematic diagram
11baA
3djoA
1r5cA
3djvA
3djxA
		more ...

Cluster 1 contains 13 ligand types

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Ligand		Description
		1. Ligand: ADN × 1 adenosine Adenosine PDB code: 1n3z(A).
		2. Ligand: SO4 × 7 Sulfate ion PDB codes: 11ba(A), 11bg(A), 1bsr(A),
		3. Ligand: PO4 × 4 Phosphate ion PDB codes: 1r3m(A), 3bcm(A), 4n4c(A).
		4. Ligand: CPA × 2 2'-Deoxycytidine-2'-Deoxyadenosine-3',5'-Monophosphate PDB codes: 1r5c(A), 1tq9(A).
		5. Ligand: U2G × 2 Uridylyl-2'-5'-Phospho-Guanosine PDB codes: 11bg(A),
		6. Ligand: ACT × 1 Acetate ion PDB code: 3djo(A).
		7. Ligand: C3P × 1 Cytidine-3'-Monophosphate PDB code: 3djv(A).
		8. Ligand: C5P × 1 Cytidine-5'-Monophosphate PDB code: 3djx(A).
		9. Ligand: U2P × 1 Phosphoric acid mono-[2-(2,4-Dioxo-3,4-Dihydro-2h- Pyrimidin-1-Yl)-4-Hydroxy-5-Hydroxymethyl- Tetrahydro- Furan-3-Yl] ester PDB code: 3djo(A).
		10. Ligand: U3P × 1 3'-Uridinemonophosphate PDB code: 1n3z(A).
		11. Ligand: UA3 × 1 Uracil arabinose-3'-Phosphate PDB code: 3djp(A).
		12. Ligand: UDP × 1 Uridine-5'-Diphosphate PDB code: 3djq(A).
		13. Ligand: UPA × 1 Uridylyl-2'-5'-Phospho-Adenosine PDB code: 11ba(A).

Cluster 2 contains 8 ligand types

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Ligand		Description
		1. Ligand: SO4 × 4 Sulfate ion PDB codes: 11bg(A), 1bsr(A),
		2. Ligand: CPA × 2 2'-Deoxycytidine-2'-Deoxyadenosine-3',5'-Monophosphate PDB codes: 1r5c(A), 1tq9(A).
		3. Ligand: C3P × 1 Cytidine-3'-Monophosphate PDB code: 3djv(A).
		4. Ligand: C5P × 1 Cytidine-5'-Monophosphate PDB code: 3djx(A).
		5. Ligand: U2P × 1 Phosphoric acid mono-[2-(2,4-Dioxo-3,4-Dihydro-2h- Pyrimidin-1-Yl)-4-Hydroxy-5-Hydroxymethyl- Tetrahydro- Furan-3-Yl] ester PDB code: 3djo(A).
		6. Ligand: UA3 × 1 Uracil arabinose-3'-Phosphate PDB code: 3djp(A).
		7. Ligand: UDP × 1 Uridine-5'-Diphosphate PDB code: 3djq(A).
		8. Ligand: UPA × 1 Uridylyl-2'-5'-Phospho-Adenosine PDB code: 11ba(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: ACT × 1 Acetate ion PDB code: 3djo(A).
		2. Ligand: U2G × 1 Uridylyl-2'-5'-Phospho-Guanosine PDB code: 11bg(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 2 Sulfate ion PDB codes: 11bg(A), 1bsr(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: PO4 × 1 Phosphate ion PDB code: 3bcm(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: PO4 × 1 Phosphate ion PDB code: 4n4c(A).