Ligand clusters for UniProt code P00581

Ligand clusters for P00581: DNA-directed DNA polymerase OS=Enterobacteria phage T7 OX=10760 GN=5 PE=1 SV=1

		Top 6 (of 7) ligand clusters Cluster 1. 6 ligand types 41 ligands Cluster 2. 4 ligand types 22 ligands Cluster 3. 1 ligand type 1 ligand Cluster 4. 1 ligand type 5 ligands Cluster 5. 1 ligand type 5 ligands Cluster 6. 1 ligand type 4 ligands
Representative protein: 6n7wH

Structures

PDB		Schematic diagram
6n7wH
6p7eA
6p7eD
1tk0A
1t8eA
		more ...

Cluster 1 contains 6 ligand types

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Ligand		Description
_Mg		1. Metal: _MG × 25 PDB codes: 1skr(A), 1sl2(A), 1t7p(A), 1t8e(A), 1tk0(A), 1tk8(A), 1tkd(A), 1zyq(A), 6n7w(H), 6n9u(H), 6n9v(H), 6n9w(H), 6n9x(H), 6p7e(A),
		2. Ligand: DAD × 4 2',3'-Dideoxyadenosine-5'-Triphosphate PDB codes: 1skr(A), 1sl0(A), 1sl2(A), 1zyq(A).
		3. Ligand: D3T × 2 2',3'-Dideoxy-Thymidine-5'-Triphosphate PDB codes: 1tk8(A), 1tkd(A).
		4. Ligand: DG3 × 1 2'-3'-Dideoxyguanosine-5'-Triphosphate PDB code: 1t7p(A).
		5. Ligand: DCT × 2 2',3'-Dideoxycytidine 5'-Triphosphate PDB codes: 1t8e(A), 1tk0(A).
		6. Ligand: TTP × 7 Thymidine-5'-Triphosphate PDB codes: 6n7w(H), 6n9u(H), 6n9v(H), 6n9w(H), 6n9x(H), 6p7e(A),

Cluster 2 contains 4 ligand types

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Ligand		Description
_Mg		1. Metal: _MG × 15 PDB codes: 1skr(A), 1skw(A), 1sl0(A), 1sl1(A), 1sl2(A), 1t7p(A), 1t8e(A), 1tk0(A), 1tk5(A), 1tk8(A), 1tkd(A), 1x9m(A), 1x9s(A), 1x9w(A), 1zyq(A).
		2. Ligand: 1PE × 4 Pentaethylene glycol PDB codes: 1tk0(A), 1tk5(A), 1tk8(A), 1tkd(A).
		3. Ligand: TTP × 2 Thymidine-5'-Triphosphate PDB codes: 6p7e(A),
		4. Ligand: PG4 × 1 Tetraethylene glycol PDB code: 1t8e(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: ASP-THR-ASP-PHE × 1 PDB code: 6p7e(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: MES × 5 2-(N-Morpholino)-Ethanesulfonic acid PDB codes: 1tk0(A), 1t8e(A), 1tk5(A), 1tk8(A), 1tkd(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 5 Sulfate ion PDB codes: 1t8e(A), 1tk0(A), 1tk5(A), 1tk8(A), 1tkd(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 4 Sulfate ion PDB codes: 1tk0(A), 1tk5(A), 1tk8(A), 1tkd(A).