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PDBsum
Ligand clusters for UniProt code D5DC07
Ligand clusters for D5DC07: Levansucrase OS=Bacillus megaterium (strain DSM 319) GN=sacB PE=1 SV=1
Top 6 (of 8) ligand clusters
Cluster 1.
3 ligand types
4 ligands
Cluster 2.
2 ligand types
2 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
2 ligands
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 3om2A
Structures
PDB
Schematic diagram
3om2
A
3om7
C
3om6
A
3om4
A
3om5
A
Cluster 1 contains 3 ligand types
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Ligand
Description
1. Ligand:
PGE × 2
Triethylene glycol
PDB codes:
3om4
(A),
3om7
(C).
2. Ligand:
P6G × 1
Hexaethylene glycol
PDB code:
3om5
(A).
3. Ligand:
PEG × 1
Di(hydroxyethyl)ether
PDB code:
3om4
(A).
Cluster 2 contains 2 ligand types
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Ligand
Description
1. Ligand:
CIT × 1
Citric acid
PDB code:
3om2
(A).
_Mg
2. Metal:
_MG × 1
PDB code:
3om2
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
CIT × 1
Citric acid
PDB code:
3om2
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 2
Sulfate ion
PDB codes:
3om4
(A),
3om6
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 1
Sulfate ion
PDB code:
3om4
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 1
Sulfate ion
PDB code:
3om7
(C).