Ligand clusters for UniProt code B0R5N9

Ligand clusters for B0R5N9: Bacteriorhodopsin OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) OX=478009 GN=bop PE=1 SV=1

		Top 6 (of 11) ligand clusters Cluster 1. 4 ligand types 4 ligands Cluster 2. 2 ligand types 3 ligands Cluster 3. 2 ligand types 3 ligands Cluster 4. 2 ligand types 3 ligands Cluster 5. 2 ligand types 3 ligands Cluster 6. 1 ligand type 2 ligands
Representative protein: 4y9hA

Structures

PDB		Schematic diagram
4y9hA
5b35A

Cluster 1 contains 4 ligand types

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file. Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: 4QM × 1 (3r,5s,7r,8r,9s,10s,12s,13r,14s,17r)-10,13-Dimethyl-17- [(2r)-Pentan-2-Yl]- 2,3,4,5,6,7,8,9,11,12,14,15,16,17- Tetradecahydro-1h-Cyclopenta[a]phenanthrene-3,7,12- Triol PDB code: 5b35(A).
		2. Ligand: D10 × 1 Decane PDB code: 4y9h(A).
		3. Ligand: D12 × 1 Dodecane PDB code: 4y9h(A).
		4. Ligand: R16 × 1 Hexadecane PDB code: 5b35(A).

Cluster 2 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: R16 × 2 Hexadecane PDB codes: 4y9h(A), 5b35(A).
		2. Ligand: D10 × 1 Decane PDB code: 5b35(A).

Cluster 3 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: D10 × 2 Decane PDB codes: 4y9h(A), 5b35(A).
		2. Ligand: D12 × 1 Dodecane PDB code: 4y9h(A).

Cluster 4 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: D12 × 2 Dodecane PDB codes: 4y9h(A), 5b35(A).
		2. Ligand: D10 × 1 Decane PDB code: 4y9h(A).

Cluster 5 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: D12 × 2 Dodecane PDB codes: 4y9h(A), 5b35(A).
		2. Ligand: DD9 × 1 Nonane PDB code: 5b35(A).

Cluster 6 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: RET × 2 Retinal PDB codes: 4y9h(A), 5b35(A).