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Ligand clusters for UniProt code B0B9A0

Ligand clusters for B0B9A0: Deubiquitinase and deneddylase Dub1 OS=Chlamydia trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B) OX=471472 GN=cdu1 PE=1 SV=1

Top 6 (of 7) ligand clusters
Cluster 1.
4 ligand types
6 ligands
Cluster 2.
1 ligand type
2 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 6gztA  
JSmol
 

Structures

PDB   Schematic diagram
6gztA    
5hagA    
6gzsA    
6fdqA    
6fdkA    
 more ...

 

 Cluster 1 contains 4 ligand types

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Ligand Description


 
1. Ligand: GOL × 2
glycerin
Glycerol
PDB codes: 6gzt(A),


 
2. Ligand: AYE × 2
Prop-2-En-1-Amine
PDB codes: 6fdk(A), 6gzs(A).


 
3. Ligand: 2UQ × 1
N-Benzyl-2-[(Z)-Iminomethyl]pyrimidine-5-Carboxamide
PDB code: 6fdq(A).


 
4. Ligand: COA × 1
Coenzyme a
PDB code: 6gzt(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 2
glycerin
Glycerol
PDB codes: 5hag(A), 6gzt(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 6gzs(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 6gzt(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 6gzs(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 6gzt(A).

 

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