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PDBsum entry 1jdb
Go to PDB code:
Ligand/metal interactions
PDB id
1jdb
8 instances of ligand highlighted
ADP
Ligands
PO4
×9
PO4 1078(B)
PO4 1082(B)
PO4 1092(K)
GLN
×8
GLN 1091(B)
GLN 1092(B)
ADP
×8
ADP 1093(B)
ADP 1094(B)
ORN
×4
ORN 1095(B)
NET
×4
NET 1096(B)
Metals
_CL
×29
CL 384(C)
CL 1085(B)
CL 1086(B)
CL 1087(B)
CL 1088(B)
CL 1089(B)
CL 1090(B)
CL 1091(E)
_MN
×16
MN 1073(B)
MN 1074(B)
MN 1079(B)
MN 1080(B)
__K
×29
K 1075(B)
K 1076(B)
K 1077(B)
K 1081(B)
K 1083(B)
K 1084(B)
K 383(C)
K 1085(E)
K 1084(K)
K 1085(K)
Ligand
ADP
-
Adenosine-5'-Diphosphate
Formula:
C
10
H
15
N
5
O
10
P
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
ADP 1093(B)
27
27
0
0
0
0
0
1
0
0
Advanced Analysis
Residue
Name Mismatches
Count
ADP 1093(B)
O3B: O1B
|
O1B: O2B
2
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
Ligand corresponds to this enzyme's product ADP
LIGPLOT
of interactions involving ligand ADP
List of
interactions
ADP 1093(B)
also representing 3 other equivalent ligands:
ADP 1095(E)
ADP 1092(H)
ADP 1095(K)
_CL
×29
__K
×29
