PDBsum entry 1jdb Go to PDB code:  Tunnel analysis for: 1jdb calculated with MOLE 2.0 PDB id 1jdb Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   11 tunnels, coloured by tunnel radius 14 tunnels, coloured by tunnel radius 14 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.17 2.08 48.6 -1.50 -0.36 24.1 91 5 5 5 8 0 0 0  MN 1074 H K 1077 H PO4 1078 H ADP 1092 H 2 1.35 1.60 63.4 -1.39 -0.53 18.9 90 8 8 8 8 0 0 0  MN 1080 H ADP 1093 H 3 1.19 1.36 64.1 -1.55 -0.59 20.1 89 8 7 8 8 0 1 0  MN 1080 B ADP 1094 B 4 1.50 1.49 53.5 -1.74 -0.58 20.5 89 7 8 7 8 0 0 0  MN 1080 K ADP 1096 K 5 1.48 1.50 55.1 -1.63 -0.60 18.6 90 6 8 8 9 0 1 0  MN 1080 K ADP 1096 K 6 1.56 1.60 16.2 -1.81 -0.43 22.0 70 2 2 3 1 1 1 0   7 1.55 1.57 20.3 -1.86 -0.41 23.2 76 2 3 3 3 1 1 0   8 1.18 2.79 28.4 -1.60 -0.20 23.8 78 5 4 1 5 3 0 0   9 1.22 3.05 20.7 -2.09 -0.27 22.4 69 4 2 1 2 3 1 0   10 1.21 2.95 27.0 -1.27 -0.03 21.4 76 5 3 1 6 3 1 0   11 1.13 1.32 20.8 -0.84 -0.48 12.3 73 2 1 2 2 1 0 1   12 1.10 1.11 32.2 -0.41 -0.22 13.9 80 3 3 2 3 2 0 0   13 1.15 1.15 31.8 -1.34 -0.59 15.7 79 4 3 2 4 0 2 0   14 1.11 1.39 20.7 1.27 0.55 1.5 78 0 0 1 6 4 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.