PDBsum entry 1jdb Go to PDB code:  Pore analysis for: 1jdb calculated with MOLE 2.0 PDB id 1jdb Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   11 pores, coloured by radius 13 pores, coloured by radius 13 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.41 3.72 40.7 -1.27 -0.20 16.8 83 3 5 3 4 2 1 0   2 2.15 2.24 61.5 -1.66 -0.37 19.8 85 3 5 3 6 2 0 0   3 2.01 2.01 65.4 -1.15 -0.21 21.1 87 6 7 1 5 1 0 0  GLN 1093 E 4 1.29 1.31 101.5 -1.80 -0.55 21.6 91 14 12 13 11 0 0 0  K 1077 E PO4 1078 E MN 1080 E K 1083 E ADP 1095 E ADP 1096 E 5 1.23 3.56 53.5 -1.05 -0.30 17.1 84 3 6 2 4 2 1 0   6 1.70 1.70 57.6 -1.38 -0.53 17.3 86 4 6 2 7 1 1 0   7 1.20 1.55 118.6 -1.38 -0.40 19.1 89 9 9 14 12 1 3 0  MN 1074 H K 1077 H PO4 1078 H CL 1086 H ADP 1092 H NET 1095 H 8 1.15 1.30 27.1 1.05 0.09 4.2 82 1 1 2 7 0 1 0   9 1.24 1.38 104.0 -1.74 -0.51 22.6 91 13 12 12 12 0 0 0  MN 1074 B K 1077 B PO4 1078 B MN 1080 B K 1083 B ADP 1093 B ADP 1094 B 10 1.30 1.44 83.7 -1.51 -0.35 21.6 82 6 7 2 4 2 2 0   11 1.42 1.51 123.4 -1.88 -0.51 23.8 91 12 14 11 13 0 1 0  K 1077 K PO4 1078 K MN 1080 K ADP 1095 K ADP 1096 K 12 1.17 1.36 123.3 -1.48 -0.58 17.9 93 9 11 12 13 0 1 0  K 1077 K PO4 1078 K MN 1080 K ADP 1096 K 13 1.34 2.64 65.6 -1.22 -0.60 17.4 87 3 3 1 4 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.