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PDBsum entry 3ogx
Go to PDB code:
Ligand/metal interactions
PDB id
3ogx
Ligand highlighted
SGN-UAP
Ligands
SGN-UAP
SGN 1(E) to UAP 2(E)
GOL
×2
GOL 172(A)
GOL 172(D)
TLA
TLA 172(C)
Ligand
SGN-UAP
SGN
-
2-Deoxy-6-O-Sulfo-2-(Sulfoamino)-Alpha-D-Glucopyranose [N,O6-Disulfo-Glucosamine; 6-O-Sulfo-N-Sulfo-Alpha-D- Glucosamine; 2-Deoxy-6-O-Sulfo-2-(Sulfoamino)-Alpha-D- Glucose; 2-Deoxy-6-O-Sulfo-2-(Sulfoamino)-D-Glucose; 2-Deoxy-6-O-Sulfo-2-(Sulfoamino)-Glucose]
Formula:
C
6
H
13
NO
11
S
2
UAP
-
4-Deoxy-2-O-Sulfo-Alpha-L-Threo-Hex-4-Enopyranuronic acid [4-Deoxy-2-O-Sulfo-Alpha-L-Threo-Hex-4-Enuronic acid; 4- Deoxy-2-O-Sulfo-L-Threo-Hex-4-Enuronic acid; 4-Deoxy- 2-O-Sulfo-Threo-Hex-4-Enuronic acid]
Formula:
C
6
H
8
O
9
S
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
SGN 1(E)
20
20
0
0
Complete
Chiral checks - OK
UAP 2(E)
16
16
1
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
SGN 1(E)
-
0
UAP 2(E)
O3S: O1S
|
O1S: O3S
|
O6A: O6B
|
O6B: O6A
4
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand SGN-UAP
List of
interactions
SGN 1(E) to UAP 2(E)
