spacer
spacer

PDBsum entry 3ogx

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 3ogx calculated with MOLE 2.0 PDB id
3ogx
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
4 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.95 2.33 28.7 -0.60 0.09 17.5 89 3 3 2 4 1 1 0  
2 1.47 1.59 33.9 -1.73 -0.34 19.9 70 5 2 2 2 4 0 2  SGN 1 E UAP 2 E
3 1.52 1.52 36.9 -0.11 -0.19 4.2 83 1 1 2 5 2 0 0  TLA 172 C GOL 172 D
4 1.48 1.59 40.3 -2.08 -0.47 25.5 72 5 4 0 2 2 3 2  SGN 1 E UAP 2 E
5 1.27 2.68 43.6 -0.02 -0.20 8.7 80 4 2 4 8 1 0 3  
6 1.45 1.89 58.7 -1.53 -0.39 15.7 77 6 3 5 5 4 2 2  TLA 172 C GOL 172 D SGN 1 E UAP 2 E
7 1.51 1.62 59.0 -1.45 -0.38 11.0 76 3 2 5 3 3 4 0  GOL 172 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer