spacer
spacer

PDBsum entry 1kd1
Go to PDB code: 
Top Page protein dna_rna ligands metals Protein-protein interface(s) links
Ligand/metal interactions PDB id
1kd1
Ligand highlighted
SPR
Ligands
SPR
SPR 9001(A)
Metals
__K ×3
K 8603(A)
K 8601(A)
K 8602(A)
_NA ×85
NA 8383(B)
NA 8304(E)
NA 8309(J)
NA 8312(T)
NA 8301(A)
NA 8302(A)
NA 8303(A)
NA 8305(A)
NA 8306(A)
NA 8307(A)
NA 8308(A)
NA 8310(A)
NA 8311(A)
NA 8313(A)
NA 8314(A)
NA 8315(A)
NA 8316(A)
NA 8317(A)
NA 8318(A)
NA 8319(A)
NA 8320(A)
NA 8321(A)
NA 8322(A)
NA 8323(A)
NA 8324(A)
NA 8325(A)
NA 8326(A)
NA 8327(A)
NA 8328(A)
NA 8329(A)
NA 8330(A)
NA 8331(A)
NA 8332(A)
NA 8333(A)
NA 8334(A)
NA 8335(A)
NA 8336(A)
NA 8338(A)
NA 8339(A)
NA 8340(A)
NA 8341(A)
NA 8342(A)
NA 8343(A)
NA 8344(A)
NA 8349(A)
NA 8350(A)
NA 8352(A)
NA 8353(A)
NA 8354(A)
NA 8355(A)
NA 8356(A)
NA 8357(A)
NA 8359(A)
NA 8360(A)
NA 8361(A)
NA 8362(A)
NA 8363(A)
NA 8364(A)
NA 8365(A)
NA 8366(A)
NA 8367(A)
NA 8368(A)
NA 8369(A)
NA 8370(A)
NA 8371(A)
NA 8372(A)
NA 8373(A)
NA 8374(A)
NA 8375(A)
NA 8376(A)
NA 8377(A)
NA 8378(A)
NA 8379(A)
NA 8381(A)
NA 8382(A)
NA 8384(A)
NA 8385(A)
NA 8351(B)
NA 8345(C)
NA 8346(K)
NA 8380(M)
NA 8347(N)
NA 8348(R)
NA 8337(S)
NA 8386(S)
_CL ×22
CL 8509(C)
CL 8519(D)
CL 8521(K)
CL 8510(M)
CL 8518(N)
CL 8507(O)
CL 8508(P)
CL 8511(R)
CL 8506(S)
CL 8520(Z)
CL 8504(4)
CL 8503(A)
CL 8505(A)
CL 8512(A)
CL 8513(A)
CL 8514(A)
CL 8515(A)
CL 8516(A)
CL 8517(A)
CL 8522(A)
CL 8501(K)
CL 8502(K)
_MG ×119
MG 8069(L)
MG 8073(U)
MG 8001(A)
MG 8002(A)
MG 8003(A)
MG 8004(A)
MG 8005(A)
MG 8006(A)
MG 8007(A)
MG 8008(A)
MG 8009(A)
MG 8010(A)
MG 8011(A)
MG 8012(A)
MG 8013(A)
MG 8014(A)
MG 8015(A)
MG 8016(A)
MG 8017(A)
MG 8018(A)
MG 8019(A)
MG 8020(A)
MG 8021(A)
MG 8022(A)
MG 8023(A)
MG 8024(A)
MG 8025(A)
MG 8026(A)
MG 8027(A)
MG 8028(A)
MG 8029(A)
MG 8030(A)
MG 8031(A)
MG 8032(A)
MG 8033(A)
MG 8034(A)
MG 8035(A)
MG 8036(A)
MG 8037(A)
MG 8038(A)
MG 8039(A)
MG 8040(A)
MG 8041(A)
MG 8042(A)
MG 8043(A)
MG 8044(A)
MG 8045(A)
MG 8046(A)
MG 8047(A)
MG 8048(A)
MG 8049(A)
MG 8050(A)
MG 8051(A)
MG 8052(A)
MG 8053(A)
MG 8054(A)
MG 8055(A)
MG 8056(A)
MG 8057(A)
MG 8058(A)
MG 8059(A)
MG 8060(A)
MG 8061(A)
MG 8062(A)
MG 8063(A)
MG 8064(A)
MG 8066(A)
MG 8067(A)
MG 8068(A)
MG 8070(A)
MG 8071(A)
MG 8072(A)
MG 8074(A)
MG 8075(A)
MG 8076(A)
MG 8077(A)
MG 8079(A)
MG 8080(A)
MG 8081(A)
MG 8082(A)
MG 8083(A)
MG 8084(A)
MG 8085(A)
MG 8086(A)
MG 8087(A)
MG 8088(A)
MG 8089(A)
MG 8090(A)
MG 8091(A)
MG 8092(A)
MG 8093(A)
MG 8094(A)
MG 8096(A)
MG 8097(A)
MG 8098(A)
MG 8099(A)
MG 8100(A)
MG 8101(A)
MG 8102(A)
MG 8103(A)
... plus 19 others
_CD ×5
CD 8401(V)
CD 8403(1)
CD 8402(2)
CD 8405(P)
CD 8404(4)
  
Ligand SPR - Spiramycin i
Formula: C43H74N2O14
Validation of ligand annotation
Per Residue Validation
Atoms Missing Incorrect Chiral Centres
Residue Dic. Struc. Link Subs. Atoms Rings Planar High C Other
SPR 9001(A) 59 59 0 0 Complete Chiral checks - OK
Additional Information
Use mouse to move/zoom
3D Viewers:
3Dmol.js
 
  JSmol

LIGPLOT of interactions involving ligand SPR

JSmol




List of
interactions
 

SPR 9001(A)
  
spacer
spacer