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PDBsum entry 1kd1
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Tunnel analysis for: 1kd1 calculated with  MOLE 2.0
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PDB id
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1kd1
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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5 tunnels,
coloured by tunnel radius |
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5 tunnels,
coloured by
tunnel radius
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5 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.33 |
1.33 |
21.9 |
-0.40 |
-0.80 |
3.4 |
0 |
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0 |
0 |
0 |
0 |
0 |
0 |
0 |
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A 1173 A C 1176 A A 1177 A G 1178 A C 1179 A U
1180 A A 1181 A A 1194 A G 1195 A G 1197 A U 1198
A C 1201 A A 1202 A
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2 |
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1.37 |
1.38 |
18.3 |
-1.09 |
-0.50 |
15.6 |
78 |
2 |
1 |
0 |
0 |
1 |
0 |
0 |
G 964 A A 965 A U 966 A U 967 A G 968 A C 1004 A
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3 |
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1.36 |
1.39 |
18.4 |
-1.18 |
-0.49 |
16.7 |
78 |
3 |
1 |
0 |
0 |
1 |
0 |
0 |
G 964 A A 965 A U 966 A U 967 A G 968 A C 1004 A
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4 |
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1.62 |
1.67 |
17.7 |
-2.38 |
-0.43 |
26.8 |
78 |
3 |
0 |
1 |
1 |
1 |
0 |
0 |
C 2502 A A 2503 A A 2504 A G 2505 A A 2517 A
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5 |
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1.65 |
1.69 |
18.2 |
-1.96 |
-0.40 |
19.7 |
82 |
3 |
0 |
1 |
1 |
1 |
0 |
0 |
C 2502 A A 2503 A A 2504 A G 2505 A A 2511 A A
2517 A
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program