PDBsum entry 1kd1 Go to PDB code:  Pore analysis for: 1kd1 calculated with MOLE 2.0 PDB id 1kd1 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   32 pores, coloured by radius 32 pores, coloured by radius 32 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.16 1.26 38.3 -0.93 -0.28 15.9 78 3 2 2 3 1 1 0  C 83 A G 88 A G 89 A G 91 A G 336 A A 484 A A 485 A A 489 A C 490 A G 504 A C 505 A G 506 A 2 2.99 2.99 48.7 -1.77 -0.66 25.2 76 4 6 0 3 0 0 0  C 83 A G 88 A G 89 A A 90 A G 91 A A 486 A U 488 A A 489 A A 495 A G 496 A A 497 A A 498 A G 499 A A 1390 A G 1391 A A 1392 A A 1427 A A 1434 A 3 3.04 3.24 54.2 -0.68 -0.63 10.7 80 2 2 1 2 0 1 0  C 83 A G 88 A G 89 A G 91 A A 486 A U 488 A A 489 A A 497 A A 498 A G 499 A G 500 A G 501 A A 502 A G 503 A A 509 A U 510 A U 1338 A 4 2.25 2.25 58.5 -0.25 -0.61 5.6 89 1 2 0 3 0 0 0  G 1135 A U 1136 A G 1137 A U 1141 A C 1142 A A 1215 A G 1216 A G 1217 A U 1218 A U 1220 A G 1221 A A 1222 A A 2784 A C 2785 A 5 1.54 1.55 74.1 -1.16 -0.70 13.4 84 4 3 3 1 0 1 0  U 63 A G 77 A G 78 A G 79 A C 83 A G 84 A C 85 A C 87 A G 88 A G 89 A G 91 A C 101 A A 102 A C 300 A G 301 A A 302 A C 303 A G 304 A A 305 A A 306 A C 344 A G 345 A C 444 A U 445 A 6 1.97 2.10 90.7 -1.34 -0.82 16.0 86 3 7 2 1 0 0 0  A 1392 A A 1393 A G 1727 A G 1728 A U 2669 A G 2670 A U 2671 A C 2672 A U 2673 A G 2674 A G 2770 A G 2771 A G 2772 A G 2773 A C 2804 A A 2805 A C 2806 A G 2810 A A 2811 A A 2812 A G 2829 A U 2830 A C 2831 A C 2832 A C 2833 A C 2835 A G 2842 A C 2844 A G 2845 A C 2846 A 7 2.50 2.52 96.7 -1.18 -0.77 14.8 85 3 4 1 1 0 0 0  G 1135 A U 1136 A G 1221 A C 1228 A C 1229 A C 2500 A G 2501 A C 2502 A U 2512 A G 2573 A G 2574 A G 2773 A U 2774 A A 2775 A A 2776 A G 2777 A A 2792 A A 2793 A G 2794 A C 2795 A 8 1.21 1.29 97.7 -1.21 -0.52 19.2 78 8 8 1 6 1 0 0  C 31 A C 87 A U 335 A G 336 A A 462 A G 479 A C 480 A U 481 A G 482 A A 484 A A 489 A C 490 A A 495 A G 496 A A 498 A G 499 A G 504 A C 505 A G 506 A G 514 A A 1390 A G 1391 A A 1392 A A 1427 A A 1434 A 9 2.81 2.81 113.0 -0.73 -0.75 9.3 85 1 6 0 2 0 0 0  G 1119 A U 1120 A G 1121 A G 1131 A A 1132 A A 1133 A G 1135 A U 1136 A G 1137 A U 1141 A C 1142 A A 1215 A G 1216 A G 1217 A U 1218 A U 1220 A G 1221 A A 1222 A G 1223 A G 1224 A C 1225 A G 1226 A C 1227 A C 1228 A A 1230 A A 1231 A G 2773 A U 2774 A A 2775 A A 2776 A A 2784 A C 2785 A A 2792 A A 2793 A G 2794 A C 2795 A C 3091 B 10 1.21 1.33 116.7 -0.99 -0.54 16.4 78 5 5 1 4 1 0 0  C 31 A C 87 A U 335 A G 336 A A 462 A G 479 A C 480 A U 481 A G 482 A A 484 A U 488 A A 489 A A 497 A A 498 A G 499 A G 500 A G 501 A A 502 A G 503 A G 504 A C 505 A G 506 A A 509 A U 510 A A 513 A G 514 A U 1338 A A 1427 A 11 2.16 2.15 127.4 -1.43 -0.68 17.6 81 10 7 2 3 0 1 0  C 31 A C 62 A U 63 A G 77 A G 78 A G 79 A C 85 A A 86 A C 101 A A 102 A C 300 A G 301 A A 302 A C 303 A G 304 A A 305 A A 306 A C 344 A G 345 A C 444 A U 445 A C 461 A A 462 A G 479 A C 480 A A 495 A G 496 A A 498 A G 499 A G 514 A A 1390 A G 1391 A A 1392 A A 1427 A A 1434 A 12 2.18 2.18 128.6 -1.31 -0.72 15.0 82 8 3 2 1 0 1 0  C 31 A C 62 A U 63 A G 77 A G 78 A G 79 A C 85 A A 86 A C 101 A A 102 A C 300 A G 301 A A 302 A C 303 A G 304 A A 305 A A 306 A C 344 A G 345 A C 444 A U 445 A C 461 A A 462 A G 479 A C 480 A U 488 A A 497 A A 498 A G 499 A G 500 A G 501 A A 502 A G 503 A A 509 A U 510 A A 513 A G 514 A A 1427 A 13 2.45 2.63 137.4 -0.78 -0.74 9.9 86 3 4 1 4 0 0 0  C 83 A G 88 A G 89 A A 90 A G 91 A A 486 A U 488 A A 489 A A 495 A A 497 A U 1388 A G 1389 A A 1390 A G 1410 A A 1411 A C 1421 A U 1422 A C 1423 A A 1424 A G 1425 A C 1426 A U 1435 A C 1436 A A 1437 A G 1438 A G 1441 A G 1496 A G 1497 A U 1503 A A 1504 A U 1505 A G 1543 A U 1544 A C 1545 A C 1570 A G 1571 A A 1572 A G 1619 A C 1620 A G 1636 A A 1637 A C 1680 A A 1685 A C 1720 A MG 8029 A 14 2.47 2.63 148.8 -1.07 -0.80 9.3 89 5 4 6 0 0 0 0  U 10 A A 11 A U 12 A G 13 A C 14 A C 15 A A 16 A G 17 A C 18 A U 19 A G 20 A A 509 A U 510 A A 519 A A 520 A U 522 A C 523 A A 524 A G 525 A U 526 A A 1337 A U 1338 A U 2659 A G 2660 A U 2661 A G 2662 A G 2668 A U 2669 A G 2670 A U 2671 A C 2672 A U 2673 A G 2674 A G 2770 A G 2771 A G 2772 A G 2773 A C 2804 A A 2805 A C 2806 A G 2810 A A 2811 A A 2812 A G 2829 A C 2844 A C 2912 A A 2913 A 15 2.81 2.81 142.9 -0.63 -0.77 8.0 85 1 4 0 1 0 0 0  A 914 A C 915 A A 929 A C 930 A G 941 A U 942 A A 943 A A 1020 A G 1034 A G 1046 A U 1047 A G 1048 A C 1049 A C 1051 A A 1058 A G 1059 A C 1060 A C 1061 A U 1062 A G 1063 A U 1064 A G 1065 A U 1066 A G 1119 A U 1120 A C 1126 A U 1128 A C 1129 A U 1130 A C 1228 A A 1231 A A 1232 A A 1236 A U 1237 A C 1238 A C 2393 A U 2492 A C 2493 A G 2524 A G 2525 A G 2773 A U 2774 A A 2775 A A 2776 A A 2792 A A 2793 A G 2794 A C 2795 A C 3091 B G 3092 B A 3093 B 16 1.59 1.59 167.6 -0.62 -0.80 6.2 80 2 2 0 0 0 0 0  C 1228 A C 1229 A A 1230 A G 1945 A C 1946 A G 1947 A G 1948 A G 1949 A G 1950 A G 1970 A G 1971 A U 2004 A G 2005 A U 2008 A G 2009 A U 2012 A A 2474 A C 2496 A A 2497 A C 2498 A U 2499 A C 2500 A U 2527 A U 2528 A C 2542 A A 2553 A U 2554 A C 2555 A G 2573 A G 2574 A C 2575 A G 2588 A U 2589 A U 2590 A C 2591 A G 2592 A G 2603 A A 2604 A U 2619 A U 2620 A A 2624 A C 2625 A C 2626 A G 2627 A U 2628 A A 2635 A C 2636 A A 2637 A G 2638 A G 2639 A U 2640 A G 2773 A U 2774 A A 2775 A A 2776 A G 2777 A A 2792 A A 2793 A G 2794 A C 2795 A 17 2.30 2.29 164.3 -1.31 -0.82 15.6 85 5 9 1 1 0 0 0  C 31 A G 33 A C 34 A U 35 A G 50 A C 62 A U 63 A C 83 A C 85 A A 86 A C 87 A G 88 A G 89 A A 90 A G 91 A A 151 A A 174 A U 176 A A 177 A C 208 A G 213 A U 214 A U 224 A G 225 A C 440 A A 441 A A 442 A C 443 A A 459 A C 461 A A 463 A G 464 A U 647 A G 648 A U 649 A C 650 A U 651 A G 724 A C 725 A G 740 A C 741 A G 742 A A 758 A C 759 A G 941 A A 1020 A C 1033 A G 1034 A C 1035 A G 1036 A G 1037 A U 2387 A C 2396 A 18 2.21 2.21 178.2 -1.18 -0.80 13.5 85 7 8 3 1 0 1 0  G 33 A C 34 A U 35 A G 50 A U 63 A G 77 A G 78 A G 79 A C 101 A A 102 A A 151 A A 174 A U 176 A A 177 A C 208 A G 213 A U 214 A U 224 A G 225 A C 300 A G 301 A A 302 A C 303 A G 304 A A 305 A A 306 A C 344 A G 345 A C 440 A A 441 A A 442 A C 443 A C 444 A U 445 A A 459 A G 464 A U 647 A G 648 A U 649 A C 650 A U 651 A G 724 A C 725 A G 740 A C 741 A G 742 A A 758 A C 759 A G 941 A A 1020 A C 1033 A G 1034 A C 1035 A G 1036 A G 1037 A U 2387 A C 2396 A 19 2.15 2.16 182.7 -0.78 -0.78 8.4 84 4 6 1 1 0 1 0  G 13 A C 14 A C 15 A A 16 A G 17 A C 18 A U 19 A G 20 A A 509 A U 510 A A 519 A A 520 A U 522 A C 523 A U 1120 A G 1121 A G 1131 A A 1132 A A 1133 A G 1135 A U 1136 A G 1221 A A 1222 A G 1223 A G 1224 A C 1225 A G 1226 A C 1227 A C 1228 A A 1230 A A 1231 A A 1232 A G 1235 A A 1236 A A 1337 A U 1338 A C 1366 A A 1367 A C 2061 A A 2062 A U 2063 A A 2083 A C 2084 A A 2085 A C 2086 A C 2087 A U 2550 A C 2551 A C 2552 A A 2577 A G 2578 A C 2651 A U 2652 A A 2653 A C 2654 A U 2655 A G 2657 A A 2677 A A 2678 A G 2679 A G 2809 A A 2813 A MG 8025 A C 3091 B 20 1.69 1.70 183.5 -1.21 -0.69 12.8 84 7 1 4 2 0 0 0  A 466 A G 467 A A 476 A U 488 A G 500 A G 501 A A 502 A G 503 A A 509 A U 510 A G 512 A A 513 A G 514 A A 844 A U 845 A U 1338 A A 1427 A C 1428 A A 1689 A G 1945 A C 1946 A G 1947 A G 1948 A G 1949 A G 1950 A G 1970 A G 1971 A U 2004 A G 2005 A U 2008 A G 2009 A U 2012 A A 2103 A C 2104 A A 2474 A G 2540 A U 2620 A U 2621 A A 2624 A C 2625 A C 2626 A G 2627 A U 2628 A A 2635 A C 2636 A A 2637 A G 2638 A U 2640 A C 2644 A U 2645 A G 2646 A SPR 9001 A 21 2.11 2.11 189.9 -1.05 -0.80 12.6 84 5 12 1 2 0 1 0  U 1120 A G 1121 A G 1131 A A 1132 A A 1133 A G 1135 A U 1136 A G 1221 A A 1222 A G 1223 A G 1224 A C 1225 A G 1226 A C 1227 A C 1228 A A 1230 A A 1231 A A 1232 A G 1235 A A 1236 A G 1391 A A 1392 A A 1393 A G 1727 A G 1728 A A 2083 A C 2084 A U 2550 A C 2551 A C 2552 A A 2577 A G 2578 A U 2655 A G 2658 A U 2659 A U 2669 A G 2670 A A 2677 A A 2678 A G 2679 A G 2809 A A 2812 A A 2813 A G 2829 A U 2830 A C 2831 A C 2832 A C 2833 A C 2835 A G 2842 A C 2844 A G 2845 A C 2846 A MG 8025 A C 3091 B 22 1.75 1.75 193.3 -1.04 -0.72 11.4 83 7 5 4 1 1 0 0  A 466 A G 467 A U 468 A A 476 A U 488 A G 500 A G 501 A A 502 A G 503 A A 509 A U 510 A G 512 A A 513 A G 514 A A 767 A U 768 A C 770 A G 772 A A 773 A A 844 A U 866 A A 867 A G 868 A G 869 A A 882 A U 883 A G 887 A U 888 A C 889 A C 890 A U 1338 A A 1427 A C 1428 A A 1459 A G 1460 A U 1461 A C 1474 A G 1475 A A 1476 A C 1477 A U 1478 A A 1479 A A 1689 A A 1857 A A 1858 A A 1859 A C 1861 A C 1862 A G 1863 A C 1864 A G 1867 A G 1868 A C 1870 A U 1871 A C 1872 A G 2125 A C 2126 A U 2127 A C 2247 A C 2248 A A 2260 A C 2261 A C 2262 A 23 2.20 2.21 215.6 -0.69 -0.77 7.0 84 4 3 3 0 1 0 0  C 40 A G 41 A U 43 A G 44 A G 47 A A 48 A A 49 A G 77 A G 78 A G 79 A C 101 A A 102 A U 103 A G 104 A G 105 A U 107 A U 108 A U 109 A C 110 A C 111 A A 114 A G 116 A C 124 A U 125 A A 128 A A 129 A U 299 A C 300 A G 301 A A 302 A C 303 A G 304 A A 305 A A 306 A C 344 A G 345 A A 352 A G 353 A A 354 A C 443 A C 444 A C 1455 A C 1456 A U 1457 A A 1458 A A 1459 A G 1460 A U 1461 A U 1478 A A 1479 A U 1480 A G 1481 A A 1482 A A 1515 A C 1516 A A 1658 A A 1659 A G 1660 A U 1671 A G 1672 A U 1673 A A 1857 A A 1858 A A 1859 A C 1861 A G 1863 A G 1867 A G 1868 A C 1870 A U 1871 A C 1872 A G 2125 A C 2126 A U 2127 A C 2247 A C 2248 A A 2260 A C 2261 A C 2262 A 24 2.30 2.30 235.2 -1.11 -0.73 12.5 84 8 4 5 4 0 0 0  C 83 A G 88 A G 89 A A 90 A G 91 A A 466 A G 467 A A 476 A A 486 A U 488 A A 489 A A 497 A A 498 A G 499 A G 514 A A 844 A U 845 A G 1135 A U 1136 A G 1221 A C 1229 A A 1230 A A 1427 A C 1428 A A 1689 A G 2099 A G 2102 A A 2103 A A 2486 A C 2487 A C 2496 A A 2497 A C 2498 A U 2499 A C 2500 A G 2501 A C 2502 A U 2512 A U 2527 A U 2528 A G 2540 A U 2541 A C 2542 A A 2553 A U 2554 A C 2555 A G 2573 A G 2574 A C 2575 A U 2589 A U 2590 A C 2591 A G 2592 A G 2603 A A 2604 A C 2608 A U 2619 A U 2620 A A 2637 A C 2644 A U 2645 A G 2646 A SPR 9001 A 25 2.52 2.52 234.0 -1.00 -0.70 11.8 82 9 6 5 4 0 1 0  C 83 A G 88 A G 89 A G 91 A A 466 A G 467 A A 476 A A 486 A U 488 A A 489 A A 497 A A 498 A G 499 A G 514 A A 844 A U 845 A C 1228 A C 1229 A A 1230 A A 1427 A C 1428 A A 1689 A G 2099 A G 2102 A A 2103 A A 2486 A C 2487 A C 2496 A A 2497 A C 2498 A U 2499 A C 2500 A U 2527 A U 2528 A G 2540 A U 2541 A C 2542 A A 2553 A U 2554 A C 2555 A G 2573 A G 2574 A C 2575 A U 2589 A U 2590 A C 2591 A G 2592 A G 2603 A A 2604 A C 2608 A U 2619 A U 2620 A A 2637 A C 2644 A U 2645 A G 2646 A G 2773 A U 2774 A A 2775 A A 2776 A G 2777 A A 2792 A A 2793 A G 2794 A C 2795 A SPR 9001 A 26 2.17 2.24 240.7 -0.63 -0.77 6.2 85 3 1 3 0 1 0 0  C 40 A G 41 A U 43 A G 44 A G 47 A A 48 A A 49 A G 77 A G 78 A G 79 A C 101 A A 102 A U 103 A G 104 A G 105 A U 107 A U 108 A U 109 A C 110 A C 111 A A 114 A G 116 A C 124 A U 125 A A 128 A A 129 A U 299 A C 300 A G 301 A A 302 A C 303 A G 304 A A 305 A A 306 A C 344 A G 345 A A 352 A G 353 A A 354 A C 443 A C 444 A G 1452 A C 1455 A U 1488 A G 1491 A A 1493 A A 1494 A C 1495 A G 1496 A U 1505 A C 1514 A A 1515 A C 1516 A U 1517 A U 1531 A G 1543 A U 1544 A C 1545 A G 1571 A A 1572 A C 1575 A A 1616 A C 1617 A G 1618 A G 1619 A C 1620 A G 1636 A A 1637 A A 1641 A C 1644 A G 1660 A A 1661 A C 1662 A G 1663 A A 1664 A G 1665 A C 1666 A U 1671 A G 1672 A U 1673 A C 1699 A 27 2.17 2.23 251.4 -0.76 -0.73 7.8 82 6 2 2 1 1 0 0  C 40 A G 41 A C 42 A U 43 A G 77 A G 78 A G 79 A C 101 A A 102 A U 103 A G 104 A G 185 A G 203 A A 204 A C 235 A A 236 A G 237 A C 271 A A 272 A G 273 A A 285 A U 286 A C 287 A A 288 A U 299 A C 300 A G 301 A A 302 A C 303 A G 304 A A 305 A A 306 A C 344 A G 345 A A 352 A G 353 A A 354 A C 355 A G 358 A U 359 A A 360 A C 361 A A 383 A G 384 A C 385 A G 404 A C 405 A G 406 A A 407 A A 411 A C 412 A G 413 A C 414 A C 421 A G 422 A A 423 A C 424 A U 425 A G 426 A C 427 A A 435 A C 444 A A 1912 A C 1913 A C 1920 A A 1921 A G 2131 A G 2134 A A 2135 A C 2243 A 28 1.18 1.32 272.7 -1.13 -0.72 13.0 82 11 10 5 3 1 2 0  C 31 A G 33 A C 34 A U 35 A G 50 A C 62 A U 63 A C 85 A A 86 A C 87 A A 151 A A 174 A U 176 A A 177 A C 208 A G 213 A U 214 A U 224 A G 225 A U 335 A G 336 A C 440 A A 441 A A 442 A C 443 A A 459 A C 461 A A 463 A G 464 A G 482 A A 484 A A 489 A C 490 A G 504 A C 505 A G 506 A U 647 A G 648 A U 649 A C 650 A U 651 A G 740 A C 741 A G 742 A A 758 A C 759 A G 1037 A U 2326 A A 2327 A U 2328 A C 2329 A U 2330 A G 2352 A A 2368 A A 2369 A A 2370 A U 2384 A G 2385 A U 2386 A U 2387 A G 2397 A A 2398 A G 2399 A G 2400 A A 2401 A A 2402 A C 2403 A C 2417 A G 2418 A U 2419 A G 2421 A U 2422 A MG 8049 A C 3015 B G 3016 B G 3017 B U 3018 B G 3019 B A 3057 B G 3058 B C 3059 B 29 2.21 2.21 294.1 -0.97 -0.66 11.2 80 8 4 4 4 1 1 0  G 388 A G 404 A C 405 A G 406 A A 466 A G 467 A A 476 A U 488 A G 500 A G 501 A A 502 A G 503 A A 509 A U 510 A G 512 A A 513 A G 514 A A 844 A U 845 A U 1338 A A 1427 A C 1428 A A 1689 A A 1909 A A 1910 A C 1911 A A 1912 A C 1913 A C 1914 A U 1915 A A 1921 A A 1922 A G 1923 A A 1924 A G 1925 A A 2103 A C 2104 A C 2105 A C 2106 A C 2119 A U 2120 A G 2121 A G 2131 A G 2134 A A 2135 A C 2243 A G 2267 A C 2268 A C 2269 A G 2279 A G 2285 A G 2286 A C 2287 A G 2288 A U 2461 A A 2463 A A 2469 A A 2470 A G 2471 A C 2472 A U 2473 A A 2474 A G 2540 A U 2620 A U 2621 A C 2629 A G 2630 A G 2632 A A 2635 A C 2636 A A 2637 A C 2644 A U 2645 A G 2646 A SPR 9001 A 30 1.91 1.91 293.1 -1.15 -0.79 12.4 84 10 9 4 1 0 2 0  C 31 A G 33 A C 34 A U 35 A G 50 A C 62 A U 63 A C 85 A A 86 A A 151 A A 174 A U 176 A A 177 A C 208 A G 213 A U 214 A U 224 A G 225 A C 440 A A 441 A A 442 A C 443 A A 459 A C 461 A A 462 A A 463 A G 464 A G 479 A C 480 A U 488 A A 497 A A 498 A G 499 A G 500 A G 501 A A 502 A G 503 A A 509 A U 510 A A 513 A G 514 A U 647 A G 648 A U 649 A C 650 A U 651 A G 740 A C 741 A G 742 A A 758 A C 759 A G 1037 A U 1338 A A 1427 A U 2326 A A 2327 A U 2328 A C 2329 A U 2330 A G 2352 A A 2368 A A 2369 A A 2370 A U 2384 A G 2385 A U 2386 A U 2387 A G 2397 A A 2398 A G 2399 A G 2400 A A 2401 A A 2402 A C 2403 A C 2417 A G 2418 A U 2419 A G 2421 A U 2422 A MG 8049 A C 3015 B G 3016 B G 3017 B U 3018 B G 3019 B A 3057 B G 3058 B C 3059 B 31 1.35 1.35 25.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  G 1162 A G 1163 A U 1164 A A 1166 A G 1175 A C 1176 A G 1178 A C 1179 A U 1180 A A 1181 A C 1183 A C 1184 A G 1190 A A 1191 A A 1192 A A 1193 A A 1194 A G 1195 A 32 1.24 1.24 44.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  A 1161 A G 1162 A G 1163 A U 1164 A G 1165 A G 1175 A C 1176 A A 1177 A C 1183 A C 1184 A G 1190 A A 1191 A A 1192 A A 1193 A G 1197 A U 1198 A A 1200 A C 1201 A A 1202 A G 1203 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.