PDBsum entry 4odb

Viral protein

PDB id: 4odb

Contents

Protein chains

162 a.a.

102 a.a.

PDB id:

4odb

Name:

Viral protein

Title:

Crystal structure of the t1l reovirus attachment protein sigma1 in complex with junctional adhesion molecule-a

Structure:

Outer capsid protein sigma-1. Chain: a, b, c. Fragment: type 1 lang sigma 1 head domain, residues 308-47. Synonym: sigma1, cell attachment protein, hemagglutinin. Engineered: yes. Junctional adhesion molecule a. Chain: d, e, f. Fragment: ig-like v-type 1 domain, residues 28-129. Synonym: jam-a, junctional adhesion molecule 1, jam-1, platelet f11

Source:

Mammalian orthoreovirus 1. Organism_taxid: 10884. Strain: lang. Gene: s1. Expressed in: escherichia coli. Expression_system_taxid: 469008. Homo sapiens. Human. Organism_taxid: 9606.

Resolution:

3.20Å R-factor: 0.214 R-free: 0.243

Authors:

E.Stettner,T.Stehle

Key ref:

E.Stettner et al. The jam-A binding site is conserved in reovirus sigma structure of the t1l sigma1-Jam-A complex. To be published, .

Date:

10-Jan-14 Release date: 01-Apr-15

Protein chains

P04506  (SIGM1_REOVL) -  Outer capsid protein sigma-1 from Reovirus type 1 (strain Lang)

Seq: 470 a.a.

Struc: 162 a.a.

Protein chains

Q9Y624  (JAM1_HUMAN) -  Junctional adhesion molecule A from Homo sapiens

Seq: 299 a.a.

Struc: 102 a.a.