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PDBsum entry 3ndh

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protein dna_rna ligands metals Protein-protein interface(s) links
Hydrolase/DNA PDB id
3ndh
Jmol
Contents
Protein chains
214 a.a.
DNA/RNA
Ligands
PGE ×3
ACT ×4
SO4 ×2
Metals
_NA ×2
_CL ×2
Waters ×471
PDB id:
3ndh
Name: Hydrolase/DNA
Title: Restriction endonuclease in complex with substrate DNA
Structure: Restriction endonuclease thai. Chain: a, b. Synonym: putative uncharacterized protein ta0828. Engineered: yes. DNA (5'-d( G Gp Tp Ap Cp Gp Cp Gp Ap Tp G)-3'). Chain: c. Engineered: yes. DNA (5'-d( C Cp Ap Tp Cp Gp Cp Gp Tp Ap C)-3'). Chain: d.
Source: Thermoplasma acidophilum. Organism_taxid: 2303. Strain: atcc25905. Gene: ta0828. Expressed in: escherichia coli. Expression_system_taxid: 562. Synthetic: yes. Synthetic: yes
Resolution:
1.30Å     R-factor:   0.172     R-free:   0.183
Authors: M.Firczuk,M.Wojciechowski,H.Czapinska,M.Bochtler
Key ref: M.Firczuk et al. (2011). DNA intercalation without flipping in the specific ThaI-DNA complex. Nucleic Acids Res, 39, 744-754. PubMed id: 20861000
Date:
07-Jun-10     Release date:   28-Jul-10    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
Q9HJY3  (Q9HJY3_THEAC) -  Putative uncharacterized protein Ta0828
Seq:
Struc:
216 a.a.
214 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 6 residue positions (black crosses)

 

 
Nucleic Acids Res 39:744-754 (2011)
PubMed id: 20861000  
 
 
DNA intercalation without flipping in the specific ThaI-DNA complex.
M.Firczuk, M.Wojciechowski, H.Czapinska, M.Bochtler.
 
  ABSTRACT  
 
No abstract given.