PDBsum entry 3ndh Go to PDB code:  Pore analysis for: 3ndh calculated with MOLE 2.0 PDB id 3ndh Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 pores, coloured by radius 9 pores, coloured by radius 9 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.17 1.39 34.8 -1.17 -0.50 17.2 86 3 4 3 1 1 0 0  DT 4 D DC 5 D DG 6 D DC 7 D 2 1.17 1.39 39.8 -0.63 -0.58 10.8 84 2 5 1 1 0 1 0  DG 8 C DA 9 C DT 10 C DG 11 C DT 4 D DC 5 D DG 6 D DC 7 D 3 1.47 1.50 43.9 -0.62 -0.42 11.1 86 2 4 3 1 1 1 0  DG 8 C DA 9 C DT 10 C DG 11 C DT 4 D DG 6 D DC 7 D 4 1.47 1.51 57.2 -0.92 -0.49 15.8 90 3 4 6 4 1 0 0  DA 4 C DG 6 C DC 7 C DG 8 D DT 9 D DA 10 D DC 11 D 5 1.17 1.18 71.2 -0.81 -0.47 16.2 84 5 6 4 5 2 1 0  DA 4 C DG 6 C DC 7 C DC 5 D DG 6 D DC 7 D DG 8 D DT 9 D DA 10 D DC 11 D 6 1.48 1.50 70.8 -0.66 -0.52 13.7 89 2 5 4 4 0 1 0  DA 4 C DG 6 C DC 7 C DG 8 C DA 9 C DT 10 C DG 11 C DT 4 D DG 6 D DC 7 D DG 8 D DT 9 D DA 10 D DC 11 D 7 1.48 1.51 102.3 -0.73 -0.49 11.0 84 6 3 7 4 2 1 0  DG 2 C DT 3 C DA 4 C DG 6 C DC 7 C DG 8 D DT 9 D DA 10 D DC 11 D 8 1.49 2.25 108.8 -1.08 -0.53 15.3 86 8 4 12 7 3 0 0  DG 2 C DT 3 C DA 10 D DC 11 D 9 1.46 1.47 122.4 -0.81 -0.52 13.5 85 7 5 10 7 2 1 0  DG 2 C DT 3 C DG 8 C DA 9 C DT 10 C DG 11 C DT 4 D DG 6 D DC 7 D DA 10 D DC 11 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.