PDBsum entry 3ndh Go to PDB code:  Tunnel analysis for: 3ndh calculated with MOLE 2.0 PDB id 3ndh Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 2 tunnels, coloured by tunnel radius 2 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.11 1.44 39.3 -1.10 -0.50 15.7 82 3 3 2 2 2 1 0  DC 5 C DG 6 C DC 7 C DG 8 C 2 1.55 1.60 16.4 -0.83 -0.56 8.7 81 1 2 2 4 0 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.