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Pfam
pandit
PANDIT
P
rotein and
A
ssociated
N
ucleotide
D
omains with
I
nferred
T
rees
(View raw data for PF04144 - SCAMP)
SCAMP family
(
Pfam
reference: accession no.
PF04144
)
(
Interpro
reference: accession no.
IPR007273
)
sequences
alignment
phylogeny
amino acids
(Pfam-A seed alignment)
15 sequences @ 186 aa
(ave. pairwise identity: 0.38)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 7.26)
nucleotides
(available for above)
13 sequences @ 558 bp
(ave. pairwise identity: 0.48)
New Hampshire format
(total tree length: 5.17)
amino acids, restricted set
(corresp. to available nt seqs)
13 sequences @ 186 aa
(ave. pairwise identity: 0.37)
New Hampshire format
(total tree length: 6.76)