Genomic Coordinates

You can find genomic coordinates information for a protein in the ‘Genomic coordinates’ tab (Figure 39). Genomic coordinates come from either: (i) genome resources such as Ensembl, Ensembl Genomes, RefSeq and WormBase ParaSite for sequences from these databases or (ii) nucleotide sequence data in the INSDC for reference proteomes from this resource. Details of the genome assembly, chromosomal location of the gene and strand are given and then each protein isoform is listed with its corresponding genomic location. Finally, the number and genomic coordinates of the exons creating each isoform and the corresponding ranges of the encoded amino acids are shown.