- Course overview
- Search within this course
- Introduction
- Course materials and software
- Metagenomics bioinformatics – course introduction
- Quality control and host decontamination
- The European Nucleotide Archive
- Tools to assemble short reads
- MGnify services
- MGnifyR
- Binning and MAG generation
- ENA metagenomics standards
- MGnify MAG resources
- Strain resolution
- Tools for comparative metagenomics
- Your feedback
All materials are free cultural works licensed under a Creative Commons Attribution 4.0 International (CC BY 4.0) license, except where further licensing details are provided.
MGnify services
Lorna Richardson provides an overview of the metagenomics services offered by EMBL-EBI’s MGnify portal. This talk covers the data resource itself, the structure of the held data, and how users can search, access, and analyse the contents. The talk covers the following topics:
- MGnify data types and data flow
- Requesting analysis
- Analysis pipeline
- Other services
- Upcoming improvements
Practical
This practical will guide you through looking at data within MGnify and the analyses that are available through the portal. You will learn how to navigate the resource, try out different ways to search for interesting samples or studies, and then investigate the analysis results that are available.
All the necessary information you need for this practical can be found below:
- MGnify services – Read the Docs
- This practical uses the MGnify portal and is entirely web-based