The Reactome Knowledgebase

Trainer: Thawfeek Varusai, Eliot Ragueneau,Krishna Tiwari

Overview: In this session, we will introduce you to Reactome and various in-built analyses tools that will help you to understand your proteomics data better.

Learning outcomes

By the end of this session you will be able to:

• Define what Reactome database is
• Cite the types of reaction types in Reactome database
• Search the Reactome website
• Navigate reactions using the Pathway Browser
• Export pathway data

Materials:

• The reactome Knowledgebase: lecture

Additional materials:

• Reactome paper: https://academic.oup.com/nar/article/48/D1/D498/5613674
• EBI self-paced training courses:
  • Beginner: https://www.ebi.ac.uk/training/online/courses/reactome-quick-tour/
  • Intermediate: https://www.ebi.ac.uk/training/online/courses/reactome-exploring-biological-pathways/
  • Advanced: https://www.ebi.ac.uk/training/online/courses/reactome-tools-for-analysing-biological-pathways/
  • Advanced: https://www.ebi.ac.uk/training/events/multiomics-comparative-pathway-analysis-reactomegsa/