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Proteomics bioinformatics

  • Overview
  • Search
  • Course content
  • Protein identification
    • Protein identification
    • Proteogenomics
    • DIA-Proteomics
  • Protein quantification
    • Quantitative Proteomics
    • Distributed and Large-Scale Quantitative Proteomics Tools
    • Introduction to MaxQuant
    • Introduction to Perseus
    • Downstream quantitative analysis/statistics
    • Post-transcriptional buffering of gene copy-number changes
  • Resources for protein identification and submission
    • Proteomics repositories, PRIDE database and re-use of public proteomics data
  • Protein interaction and network analysis
    • A guide to molecular interactions
    • Introduction to Network Analysis using the IntAct Cytoscape App
    • The Reactome Knowledgebase
  • Final overview and Recap
  • Technical help sheet
  • Trainer biographies
  • Further learning
  • Your feedback

Creative Commons

All materials are free cultural works licensed under a Creative Commons Attribution 4.0 International (CC BY 4.0) license, except where further licensing details are provided.

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Protein interaction and network analysis

This section focuses on protein interactions and network analysis. It contains lectures and practicals on:

  • IntAct database
  • PSICQUIC & IMEx tools
  • IntAct Cytoscape App
  • Reactome database
  • page navigation-left-circle-1_1 Proteomics repositories, PRIDE database and re-use of public proteomics data
  • pageA guide to molecular interactions navigation-right-circle-1_1