Course content

To see details about the live Microscopy data analysis course and the original programme, you can refer to the course page and programme.

The contents table below outlines the different sessions that were included in the course, as well as the format of the materials (slides/videos/practicals) and each session’s trainer. Either proceed through the materials using the arrows at the end of each page or pick your topic of interest from the table below to skip straight to it.

 Presentation slides –  View or download the slides

 Recorded lectures – Watch the lecture videos 

Practicals – View or download the slides, exercises, datasets, analysis scripts and results

Format	Subject	Trainer
	Introduction to image analysis
	Introduction to image analysis	Alvis Brazma & Virginie Uhlmann
	Segmentation with StarDist and SplineDist	Martin Weigert, Soham Mandal, Virginie Uhlmann
	ZeroCostDL4Mic	Craig Ryusell, Virginie Uhlmann, Soham Mandal, Ricardo Henriques, Romain Laine Guillaume Jacquemet
	Introduction to bioimage databases and resources
	The BioStudies database	Ugis Sarkans, Awais Athar
	The BioImage Archive	Matthew Hartley, Craig Russell, Romain Laine, Guillaume Jacquemet, Maria Tess
	EMPIAR	Gerard Kleywegt, Osman Salih, Andrii Iudin, Simone Weyand
	Image data resource – IDR	Jason Swedlow, Frances Wong, Jean Marie Burel, Petr Walczysko
	Image analysis tools
	BioImage Model Zoo	Anna Kreshuk, ilastik team, Wei Ouyang, Esti Gomez de Mariscal, Dominik Kutra, Fynn Beuttenmüller
	CellProfiler	Beth Cimini, CellProfiler team, Nasim Jamali, David Stirling, Barbara Diaz-Rohrer