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Introduction to metabolomics analysis

  • Overview
  • Search
  • Course content
  • Introduction to Metabolomics
  • Experimental design and quality control in metabolomics
  • Introduction to LC-MS platforms, data types and quality assessment of data
  • Galaxy in Metabolomics
  • Methods and resources
    • Statistical analysis (Data modelling)
    • Metabolite Identification
    • MetaboLights data and workflows: lecture and tutorial
    • Pathways with Reactome
    • Spatial single-cell metabolomics
  • Other Metabolomics materials
    • LC/GC-MS: Data acquisition and Data processing (MS1 and MSn)
    • Case study: Metabolon
    • WikiPathways
  • Trainer biographies
  • Further learning
  • Your feedback

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WikiPathways

Trainer: Egon Willighagen

Overview: This short overview will demonstrate WikiPathways as a platform for metabolomics data analysis. It will cover what WikiPathways is, how it represents biological information, how it is curated, how it is linked to other databases, and how it is used in pathway and network analyses.

Learning outcomes:

By the end of this session you will be able to:

  • Describe the functionalities of WikiPathways

Materials:

  • Presentation slides
  • Pathway analysis with PathVisio
  • page navigation-left-circle-1_1 Case study: Metabolon
  • pageTrainer biographies navigation-right-circle-1_1