The Introduction to metabolomics analysis course, which provided an introduction to publicly available data, softwares and tools used for metabolomics data analysis, ran in May 2025. Here, we have made the course materials available for you to access any time.

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Using these materials

These course materials provide a mixture of pre-recorded lectures, presentations and practicals to help advance your skills in the analysis of metabolomics data. You may select your topic of interest from the Course content page to view the relevant materials or work your way through all the course materials. 

To find out more about the trainers who created these materials, follow the links from the Course content page or go directly to the Trainer biographies page.

In the Further learning section you may explore the details about the EMBL-EBI’s free access online tutorials and webinars on a variety of life sciences topics.

If you would like to provide feedback on this set of course materials, please use the form on the Your feedback page.

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Learning outcomes

After the course you should be able to:

• Perform basic data acquisition, processing, and modelling in metabolomics 
• Estimate what factors contribute to designing a successful metabolomics study
• Describe the issues of data standards and sharing in metabolomics
• Access and use public metabolomics resources 
• Cite the principles of creating a standardised workflow to perform basic metabolomics analysis
   

Material collection editors

• Piv Gopalasingam, EMBL-EBI
• Thomas Payne, EMBL-EBI
• Noemi Tejera Hernandez, EMBL-EBI
• Juan Antonio Vizcaino, EMBL-EBI

DOI: 10.6019/TOL.MetabolomicsMaterials-t.2022.00001.1