Practical challenge on model curation

Trainer: Rahuman Sheriff, Eva Geissen and Benjamin Maier

Overview: In this section you will learn to encode and simulate ordinary differential equation models of signalling pathways from a recent publication using COPASI. Furthermore, you will learn how to annotate models and re-use pre-existing models from open repositories such as BioModels.

Learning outcomes:

By the end of this challenge you should be able to:

• Annotate models
• Re-use pre-existing model from BioModels

Relevant webpages:

• COPASI
• BioModels
• EuropePMC
• BioSudies
• OmicsDI

Materials:

• Instructions for group challenge

The following recorded webinars provided overviews on the purpose and the use of several databases that are relevant to work on the group challenge on model curation: BioModels, BioStudies, Europe PMC and OmicsDI.

• BioModels

• BioStudies

• EuropePMC

• OmicsDI