Course content

To see details about the live Cancer Genomics course and the original programme, you can refer to the course page and programme.

The contents table below outlines the different sessions that were included in the course, as well as the format of the materials (slides/videos/practicals) and each session’s trainer. Either proceed through the materials using the arrows at the end of each page or pick your topic of interest from the table below to skip straight to it.

 Presentation slides –  View or download the slides

 Recorded lectures – Watch the lecture videos 

Practicals – View or download the slides, exercises, datasets, analysis scripts and results

Format	Subject	Trainer
	Introduction to cancer genomics and transcriptomics
	Introduction to cancer genomics and its caveats	Tobias Rausch
	High-throughput sequencing and single-nucleotide variant analysis in cancer	Daniela Robles-Espinoza
	Practical: Alignment and SNV analysis	Daniela Robles-Espinoza, Patricia Basurto and Kenya Lizbeth Contreras-Ramírez
	Structural and copy number variation, and mutational signatures
	Structural and copy-number variation analysis	Tobias Rausch
	Practicals: SV/CNV analysis using short-reads	Tobias Rausch
	Interrogating cancer genomes using long reads	Tobias Rausch
	Mutational processes and clonal population structure in cancer genomes	Jing Su
	Practicals: Mutational signatures and clonal population structure analysis in cancer genomes	Jing Su
	Single-cell sequencing in cancer
	Introduction to single-cell technologies in cancer genomics	Simone Zaccaria
	Single-cell cancer research in non-model organisms	Veronica Busa
	Practical: Deconvolution of the clonality of a tumor using single-cell transcriptomic data	Estefania Vázquez and Gabriel Pereira
	Short-read RNA-seq analysis	Alexey Larionov
	Long-read RNA-seq analysis	Alexey Larionov
	CRISP-Cas9 genome editing	Francesco Iorio
	Further learning