To see details about the live Cancer genomics and transcriptomics course and the original programme, you can refer to the course page and programme.

The contents table below outlines the different sessions that were included in the course, as well as the format of the materials (slides/videos/practicals) and each session’s trainer. Either proceed through the materials using the arrows at the end of each page or pick your topic of interest from the table below to skip straight to it.

 Presentation slides –  View or download the slides

 Recorded lectures – Watch the lecture videos 

Practicals – View or download the slides, exercises, datasets, analysis scripts and results

Format	Subject	Trainer
	Introduction to cancer genomics and transcriptomics
	Introduction to cancer genomics and its caveats	Tobias Rausch
	High-throughput sequencing and single-nucleotide variant analysis in cancer	Daniela Robles-Espinoza
	Practical: Alignment and SNV analysis	Daniela Robles-Espinoza, Patricia Basurto and Kenya Lizbeth Contreras-Ramírez
	Structural and copy number variation, and mutational signatures
	Structural and copy-number variation analysis	Tobias Rausch
	Practicals: SV/CNV analysis using short-reads	Tobias Rausch
	Interrogating cancer genomes using long reads	Tobias Rausch
	Mutational processes and clonal population structure in cancer genomes	Tobias Rausch
	Single-cell sequencing in cancer
	Introduction to single-cell technologies in cancer genomics	Deniz Demircioglu
	Introduction to single-cell technologies in cancer genomics: practicals and troubleshooting	Deniz Demircioglu
	Practical: Deconvolution of the clonality of a tumor using single-cell transcriptomic data	Estefania Vázquez and Gabriel Pereira
	RNA-Seq analysis in cancer research
	Short-read RNA-seq analysis	Alexey Larionov
	Long-read RNA-seq analysis	Alexey Larionov
	CRISPR-Cas9
	CRISPR-Cas9 genome editing for identifying cancer dependencies and new therapeutic targets	Francesco Iorio
	Pre-processing, QC assessment, and visualisation of gene essentiality profiles from CRISPR-Cas9 screens (practicals and troubleshooting)	Francesco Iorio
	Epigenetics
	Epigenetics lecture	Saul Carcamo
	Epigenetics practical	Saul Carcamo
	Further learning