The Bioinformatics and functional genomics in zebrafish, which focused on the tools to carry out functional analysis and data visualisation of zebrafish RNA-seq data that has already been mapped to the genome and been analysed for differential gene expression, ran in September 2022. Here, we have made the course materials available for you to access any time.

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Using these materials

These course materials provide a mixture of presentations and practicals to help advance your skills in the analysis of zebrafish data. You may select your topic of interest from the Course content page to view the relevant materials or work your way through all the course materials. 

To find out more about the trainers who created these materials, follow the links from the Course content page or go directly to the Trainer biographies page. You can also find the software requirements for the practicals in the Technical help sheet.

In the Further learning section you may explore the details about the EMBL-EBI’s free access online tutorials and webinars on a variety of life sciences topics.

If you would like to provide feedback on this set of course materials, please use the form on the Your feedback page.

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Learning outcomes

After this course you should be able to:

• Design and implement RNA-seq experiments using zebrafish
• Know and apply common approaches and tools used in the analysis of zebrafish expression data
• Undertake basic data visualisation
• Query RNA-seq datasets for gene signatures and patterns of gene expression
• Undertake cross-species comparison of gene datasets
• Have working knowledge of web and R-based approaches for analysing gene expression.

Material collection editors

• Elisabeth Busch-Nentwich, Queen Mary University of London
• Patricia Carvajal Lopez, EMBL-EBI

DOI: 10.6019/TOL.ZebrafishGenomics-t.2022.00001.1