Course content

To see details about the live Bioinformatics and functional genomics in zebrafish course and the original programme, you can refer to the course page and programme.

The contents table below outlines the different sessions that were included in the course, as well as the format of the materials (slides/practicals) and each session’s trainer. Either proceed through the materials using the arrows at the end of each page or pick your topic of interest from the table below to skip straight to it.

 Presentation slides –  View or download the slides

 Practicals – View or download the slides, exercises, datasets, analysis scripts and results

Format	Subject	Trainer
	Guidelines for experimental design: General considerations and best practices	Busch-Nentwich Group
	Metadata submission	Busch-Nentwich Group
	Processing zebrafish RNA-seq data using command line and R
	Command line for data filtering	Ian Sealy
	Introduction to tidy data and data visualisation with R	Richard White
	Zebrafish-specific dataset practicals	Busch-Nentwich Group
	Resources for analysing zebrafish data
	Ensembl: Introduction, data visualisation, and export	Aleena Mushtaq and Louisse Mirabueno
	Zebrafish-specific Ensembl practical and further data visualisation using R	Busch-Nentwich Group
	Gene Ontology	Antonia Lock
	Cytoscape	Richard White
	Reactome	Krishna Tiwari and Eliot Ragueneau
	Zebrafish anatomy	Ian Sealy
	Zebrafish-specific Gene Ontology, Zebrafish Anatomy, and Reactome practical	Busch-Nentwich Group
	Data and metadata submission and zebrafish data in Expression Atlas	Nancy George
	Practical: making figures for new zebrafish dataset	Busch-Nentwich Group