Virtual course
Managing a bioinformatics core facility
This virtual knowledge exchange workshop is an opportunity for managers of bioinformatics core facilities to learn from EMBL-EBI’s service teams, from each other, and from potential users of their services. These facilities play an essential role in enabling research in the molecular life sciences. The landscape is constantly evolving as new research tools emerge, as experiments become increasingly data intensive, and as their clients – experimental researchers – become more exposed to the power of data-driven biology.
Virtual workshop
The workshop will involve participants learning via pre-recorded lectures, live presentations, and trainer Q&A sessions. The content will be delivered over Zoom, with additional text communication over Slack. Live sessions will include both group and individual activities, alongside optional social and networking opportunities.
Participants will need to be available between the hours of 08:45 - 15:30 BST each day.
Programme may be subject to slight changes before registration.
Who is this course for?
This workshop is aimed at new and experienced managers of bioinformatics core facilities, or other facilities that support their users to analyse and interpret large biomolecular data sets. This course will not provide a platform for teaching hands-on bioinformatics analysis.
What will I learn?
Learning outcomes
After this workshop you should be able to:
- Identify the strengths and limitations of your core facility
- Apply a framework for designing new services (including training your users) or redesigning existing services
- Appreciate different cost models, their pros and cons, and how to apply them in the context of your core facility
- Advise your users on how to manage sensitive data and where to submit them
Course content
- The role of core bioinformatics facilities
- How to design and resource your service
- Introduction to project management
Trainers
Cath Brooksbank
EMBL-EBI Sarah Butcher
EMBL-EBI Andrew Hercules
EMBL-EBI Vera Matser
EMBL-EBI Patricia Carvajal Lopez
EMBL-EBI
Programme
Day 1 – Tuesday 18 May
08:45 – 09:00
Virtual arrivals - bring your own beverage and say hi to the other participants
09:00 – 09:15
Welcome and participant introductions and participants challenges and expectations
Cath Brooksbank
09:15 – 9:30
Paired flash talks
Patricia Carvajal-López
9:30 – 9:40
Break
9:40 – 11:00
Deliver paired flash talks
All
11:00 - 12:45
Lunch break
12:45 - 13:00
Settle back in
13:00 – 13:50
Keynote - The evolving role of bioinformatics core facilities
Sarah Butcher
13:50 – 14:00
Short Break
14:00 – 15:00
Spectrum exercise
Andrew Hercules & Vera Matser
15:00 – 15:30
Science speed dating
Marina Pujol & Faculty Members
Day 2 – Wednesday 19 May
08:45 – 9:00
Virtual arrivals - bring your own coffee and say hi to the other participants
09:00 – 09:45
The F words: funding and finances - talk
Sarah Butcher
09:45 – 10:00
Break
10:00 - 10:45
Resourcing your service: people and compute - talk
Sarah Butcher
10:45 - 11:00
Break
11:00 - 12:15
Resourcing your service: cost model exercise
Sarah Butcher with course faculty members
12:15 - 13:00
Lunch break
13:00 – 13:15
Settle back in
13:15 – 15:30
Resourcing your service: short talk and grant-costing exercise
Sarah Butcher with other faculty members
Day 3 – Thursday 20 May
08:45 – 9:00
Virtual arrivals - bring your own coffee and say hi to the other participants
09:00 – 10:00
(re)Designing Your Service - Part 1 - The Design Process
Andrew Hercules and Vera Matser
10:00 – 10:15
Short Break
10:15 - 11:15
(re)Designing Your Service - Part 2 - Understanding Users
Andrew Hercules and Vera Matser
11:15 - 11:20
Group photo
11:20 – 12:45
Lunch break
12:45 – 13:00
Settle back in
13:00 – 14:30
Project Management - Approaches and Tools
Andrew Hercules and Vera Matser
14:30 – 14:45
Short Break
14:45 – 15:00
Revisit Challenges and expectations
Cath Brooksbank
15:00 – 15:30
Workshop wrap up, feedback and additional resources
Cath Brooksbank
Before starting your application please read our application advice page. In order to be considered for a place on this course, you must submit a complete application which includes the following sections:
- Complete the online application form providing answers as directed
- Ensure you add relevant information to the "Application submission" section where you are asked to provide three 100-word paragraphs to describe your:
- scientific biography
- work history
- current research interests
- Upload a letter of support from your supervisor or a senior colleague detailing reasons why you should be selected for the course
Please submit all documents during the application process by midnight on Friday 19 March 2021.
Incomplete applications will not be considered.
All applicants will be informed of the status of their application (successful, waiting list, rejected) by Friday 9 April 2021. If you have any questions regarding the application process please contact Marina Pujol (mpujol@ebi.ac.uk).
EMBL-EBI
EMBL-EBI
EMBL-EBI
EMBL-EBI
EMBL-EBI
Programme
| Day 1 – Tuesday 18 May | ||
| 08:45 – 09:00 | Virtual arrivals - bring your own beverage and say hi to the other participants | |
| 09:00 – 09:15 | Welcome and participant introductions and participants challenges and expectations | Cath Brooksbank |
| 09:15 – 9:30 | Paired flash talks | Patricia Carvajal-López |
| 9:30 – 9:40 | Break | |
| 9:40 – 11:00 | Deliver paired flash talks | All |
| 11:00 - 12:45 | Lunch break | |
| 12:45 - 13:00 | Settle back in | |
| 13:00 – 13:50 | Keynote - The evolving role of bioinformatics core facilities | Sarah Butcher |
| 13:50 – 14:00 | Short Break | |
| 14:00 – 15:00 | Spectrum exercise | Andrew Hercules & Vera Matser |
| 15:00 – 15:30 | Science speed dating | Marina Pujol & Faculty Members |
| Day 2 – Wednesday 19 May | ||
| 08:45 – 9:00 | Virtual arrivals - bring your own coffee and say hi to the other participants | |
| 09:00 – 09:45 | The F words: funding and finances - talk | Sarah Butcher |
| 09:45 – 10:00 | Break | |
| 10:00 - 10:45 | Resourcing your service: people and compute - talk | Sarah Butcher |
| 10:45 - 11:00 | Break | |
| 11:00 - 12:15 | Resourcing your service: cost model exercise | Sarah Butcher with course faculty members |
| 12:15 - 13:00 | Lunch break | |
| 13:00 – 13:15 | Settle back in | |
| 13:15 – 15:30 | Resourcing your service: short talk and grant-costing exercise | Sarah Butcher with other faculty members |
|
Day 3 – Thursday 20 May |
||
| 08:45 – 9:00 | Virtual arrivals - bring your own coffee and say hi to the other participants | |
| 09:00 – 10:00 | (re)Designing Your Service - Part 1 - The Design Process | Andrew Hercules and Vera Matser |
| 10:00 – 10:15 | Short Break | |
| 10:15 - 11:15 | (re)Designing Your Service - Part 2 - Understanding Users | Andrew Hercules and Vera Matser |
| 11:15 - 11:20 | Group photo | |
| 11:20 – 12:45 | Lunch break | |
| 12:45 – 13:00 | Settle back in | |
| 13:00 – 14:30 | Project Management - Approaches and Tools | Andrew Hercules and Vera Matser |
| 14:30 – 14:45 | Short Break | |
| 14:45 – 15:00 | Revisit Challenges and expectations | Cath Brooksbank |
| 15:00 – 15:30 | Workshop wrap up, feedback and additional resources | Cath Brooksbank |
Before starting your application please read our application advice page. In order to be considered for a place on this course, you must submit a complete application which includes the following sections:
- Complete the online application form providing answers as directed
- Ensure you add relevant information to the "Application submission" section where you are asked to provide three 100-word paragraphs to describe your:
- scientific biography
- work history
- current research interests
- Upload a letter of support from your supervisor or a senior colleague detailing reasons why you should be selected for the course
Please submit all documents during the application process by midnight on Friday 19 March 2021.
Incomplete applications will not be considered.
All applicants will be informed of the status of their application (successful, waiting list, rejected) by Friday 9 April 2021. If you have any questions regarding the application process please contact Marina Pujol (mpujol@ebi.ac.uk).