Virtual course
Basics to Advanced Genome Annotations at Ensembl and REST Application Programming Interfaces (APIs)
NextGenHelper
We are organising this high quality workshop for the participants interested in the genomics, bioinformatics, and genome annotations. In this workshop, one of the trainers from European Bioinformatics Institute (EMBL-EBI), United Kingdom, will provide the hands-on training sessions of 'Ensembl Genome browser, and Ensembl REST Application Programming Interfaces (APIs)'. This workshop will cover the topics from basics to advanced techniques of genome annotations. This workshop will be equally useful for the researchers working with any domain of life (e.g. microbes, animals, fungus, and plants). At the successful completion of this workshop, participants will be become expert of all the modules of Ensembl Genome browser, and Ensembl REST Application Programming Interfaces (APIs) for their research.
Who is this course for?
Who can participate: Students (B.Sc./B.Tech/M.Sc./M.Tech), Research Fellows, PhD Student, Faculty, Scientists, and Company Personals.
Prerequisites
- Participants must have access to the laptop/desktop with a stable internet connection.
- Basic knowledge of R or Python for full REST API course (only for last four day of workshop e.g. 27th - 30th July).
Trainers
Emily Perry
European Bioinformatics Institute Michal Szpak
European Bioinformatics Institute Aleena Mushtaq
European Bioinformatics Institute
European Bioinformatics Institute
European Bioinformatics Institute
European Bioinformatics Institute
Programme
Ensembl browser course
Day 1, July 19, 2021
06:30 - 06:45 PM: Welcome speech and Introduction of chief guest to audience by Dr. Adarsh Kumar
06:45 - 07:00 PM: Inauguration speech by Dr. Partha P. Majumdar
07:00 - 08:30 PM: Introduction to Ensembl and browsing regions
Day 2, July 20, 2021
07:00 - 08:30 PM: Genes and transcripts in Ensembl
Day 3, July 21, 2021
07:00 - 07:30 PM: Ensembl Variation and VEP
Day 4, July 22, 2021
07:00 - 08:30 PM: Comparative genomics data in Ensembl and exercises
Day 5, July 23, 2020
07:00 - 08:30 PM: Ensembl Regulation
Day 6, July 26, 2021
06:30 - 06:45 PM: Welcome speech and Introduction of chief guest to audience by Dr. Adarsh Kumar
06:45 - 07:00 PM: Inauguration speech by Dr. K Thangaraj
07:00 - 08:30 PM: BioMart and exercises
Ensembl REST API course
Day 1, July 27, 2021
07:00 - 08:30 PM: Overview of the REST API and accessing GET queries
Day 2, July 28, 2021
07:00 - 08:30 PM: Decoding JSON and chaining REST queries together
Day 3, July 29, 2021
07:00 - 08:30 PM: Using non-JSON formats
Day 4, July 30, 2021
07:00 - 08:30 PM: Accessing POST queries and Rate limiting and exercises
Please register with NextGenHelper