ESGI Data Flow Workshop
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Date:
Tuesday 7 February 2012Application opens:
Tuesday 20 December 2011Application deadline:
Friday 06 January 2012Contact:
Alison BarkerRegistration closed
Overview
This workshop will provide training covering submission and retrieval services provided by the EBI's European Nucleotide Archive (ENA; //www.ebi.ac.uk/ena/) for raw and early analysis data from next generation nucleotide sequencing platforms. In addition, we will cover emerging technology for the efficient compression of these data. Students can expect to become familiar with submission and retrieval formats for both metadata and data, submission pipelines and data retrieval using browser and webservices methods, and the use of compressed formats in data processing and analysis. This workshop is supported by the European Sequencing and Genotyping Infrastructure project funded under the FP7 programme of the European Commission (ESGI; http://www.esgi-infrastructure.eu/).
Additional information
This course will take place in the EMBL-EBI IT Training room which has 40 computers set up with the relevant disk images required for this course.
We recommend participants who require any additional nights accommodation book at the Wellcome Trust Conference Centre, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.
Programme
| Times | Topic | Trainer |
|---|---|---|
| Tuesday 7th February 2012 | ||
| 12:00-13:30 | Registration and lunch | |
| 13:30-13:45 | Welcome | |
| 13:45-14:15 | SRA Introduction | |
| 14:15-14:45 | SRA Browsing and Data retrieval | |
| 14:45-15:30 | Sequence data compression | |
| 15:30-16:00 | Tea/Coffee Break | |
| 16:00-17:30 | Hands-on session I : retrieval | |
| 17:30-21:00 | Workshop Dinner sponsored by ESGI | |
| Wednesday 8th February 2012 | ||
| 09:00-09:30 | SRA: Submissions : SRA Webin | |
| 09:30-10:00 | SRA: Submissions : SRA REST | |
| 10:00-10:45 | Hands-on session II : submission | |
| 10:45-11:15 | Tea/Coffee Break | |
| 11:15-13:00 | Hands-on session II : submission | |
How to apply
Registration Fee £30
Registration
Please note that the registration fee includes:
* Workshop dinner on the 7th February sponsored by ESGI
* Meals at EBI (refreshments breaks and lunch)
* Course materials & USB stick
* Use of EBI IT Training Room computer during the 2 day course
All delegates will need to arrange and pay for their own travel to and from the course and accommodation if required on the night on 7th February. We recommend booking your accommodation at the Wellcome Trust Conference Centre. We are holding a number of rooms there until the 24th December so please book immediately to secure your room. Your credit card details will be required in order to secure the booking. Rooms are limited and are on a first come first serve basis, therefore we recommend booking early.
There will be a maximum of 30 participants on this course and registration is on a first come first serve basis. Registration will close on Friday 6th January 2012 @ 12:00 (midday) GMT.
To register for this workshop please use the following link (Items marked * are mandatory. Incomplete registrations will not be processed). You will need to pay by credit card as you submit your registration, therefore please have your card to hand.
Application deadline
06 January 2012
Organisers
Guy Cochrane
Sheila Plaister