PDBsum entry 9pda Go to PDB code:  Tunnel analysis for: 9pda calculated with MOLE 2.0 PDB id 9pda Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.31 1.31 15.7 -0.82 -0.72 7.2 58 0 1 1 1 1 0 1  BEN 301 C PEG 304 C 2 1.23 1.23 19.9 -0.88 -0.66 7.6 70 0 1 2 1 1 0 0  BEN 301 A PEG 308 A 3 1.28 2.30 15.6 1.73 0.47 4.3 79 1 1 1 5 1 0 2  PG6 303 A 4 1.15 1.15 16.8 -0.95 -0.83 9.4 71 0 1 1 0 0 0 1  BEN 301 B 5 1.19 1.19 17.4 -1.07 -0.82 9.8 94 1 1 2 0 0 0 0  BEN 301 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.