PDBsum entry 9jmd Go to PDB code:  Tunnel analysis for: 9jmd calculated with MOLE 2.0 PDB id 9jmd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.22 1.32 38.4 -1.59 -0.19 19.6 77 6 2 0 2 3 0 0   2 1.22 1.32 39.3 -0.58 0.04 10.4 81 4 2 2 8 2 0 0  CLR 502 R 3 1.20 1.32 46.4 -0.92 -0.16 13.4 80 5 3 2 7 2 0 0   4 1.22 1.32 48.5 -1.81 -0.34 22.0 82 5 5 2 3 3 0 0   5 1.25 1.33 60.1 -1.67 -0.23 19.5 79 7 5 3 4 4 1 0   6 1.39 1.71 20.8 -0.94 -0.29 14.0 80 2 3 0 3 1 1 0   7 1.21 2.01 18.3 -0.75 -0.25 21.7 88 1 3 2 3 0 0 0   8 1.21 2.05 19.5 -0.69 -0.20 22.4 88 1 4 2 4 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.