PDBsum entry 9jmd Go to PDB code:  Pore analysis for: 9jmd calculated with MOLE 2.0 PDB id 9jmd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.56 1.70 69.7 -1.85 -0.26 23.0 81 10 2 4 2 4 0 0   2 1.37 1.55 79.0 -1.44 -0.35 18.1 86 7 3 6 3 3 1 0   3 2.46 3.76 111.8 -2.53 -0.47 31.8 80 11 9 1 2 4 1 0   4 1.28 3.11 116.7 -2.39 -0.50 29.5 81 10 8 3 3 2 0 1   5 2.46 2.52 157.6 -2.15 -0.48 27.9 81 11 11 2 4 2 1 1   6 1.13 1.28 30.4 0.27 -0.15 10.0 67 1 2 0 6 3 0 0  ZIT 503 R 7 1.74 1.74 32.5 -1.48 -0.29 16.7 75 2 3 3 3 2 0 0  ZIT 503 R 8 1.13 1.28 38.2 -0.96 0.03 14.8 75 3 2 3 5 2 0 0  ZIT 503 R Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.