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PDBsum entry 9guj

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Top Page protein dna_rna ligands Protein-protein interface(s) pores links
Pore analysis for: 9guj calculated with MOLE 2.0 PDB id
9guj
Pores calculated on whole structure Pores calculated excluding ligands

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15 pores, coloured by radius 15 pores, coloured by radius 15 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.61 2.73 29.2 -1.27 -0.65 15.3 85 4 1 1 1 1 0 0  DA 27 C DA 28 C DA 29 C DA 30 C DT 7 E DA 8 E DT
9 E DG 10 E DT 11 E DA 12 E DA 15 G DG 16 G DC 17
G
2 2.27 2.27 35.6 -0.94 -0.86 10.8 98 0 3 2 0 0 0 0  DC 17 C DT 18 C DG 19 C DA 20 C DC 17 E DT 18 E
DG 19 E DA 20 E
3 1.28 1.81 48.9 -0.62 -0.39 12.4 89 3 3 5 8 2 0 0  DA 30 C DT 7 E DA 8 E
4 4.57 4.58 50.0 -1.46 -0.70 13.3 88 3 4 9 2 0 0 0  DT 7 G DA 8 G DC 17 G DA 20 I DT 21 I DC 23 I DA
30 I
5 1.74 1.74 54.0 -0.97 -0.66 12.7 86 5 2 2 2 0 0 0  DT 7 C DA 8 C DT 9 C DG 10 C DT 11 C DA 12 C DT
13 C DA 27 E DA 28 E DA 29 E DA 30 E DT 31 E
6 1.31 1.33 56.1 -0.03 -0.20 11.8 84 3 3 6 10 2 0 0  DT 7 C DA 8 C DA 30 E DT 31 E
7 3.98 4.29 56.0 -1.25 -0.67 12.3 91 2 4 10 2 0 0 0  DT 7 C DA 8 C DC 17 C DA 20 E DT 21 E DA 30 E DT
31 E
8 2.75 2.75 71.3 -1.41 -0.70 17.7 91 3 3 2 0 0 0 0  DA 15 C DG 16 C DC 17 C DA 20 E DT 21 E DC 17 G D
A 24 G DT 25 G DA 26 G DA 27 G DG 10 I DT 11 I DA
12 I
9 1.21 1.71 72.7 -0.06 -0.03 10.5 87 4 2 7 12 4 0 0  
10 2.28 2.28 77.9 -1.14 -0.69 14.1 81 3 2 0 0 0 0 0  DA 15 C DG 16 C DC 17 C DT 18 C DG 19 C DA 20 C
DC 17 E DT 18 E DG 19 E DA 20 E DT 21 E DA 24 G
DT 25 G DA 26 G DA 27 G DG 10 I DT 11 I DA 12 I
11 1.24 1.31 81.0 -0.46 -0.30 14.2 82 7 4 3 9 2 0 0  DA 8 C DT 9 C DG 10 C DT 11 C DA 12 C DT 13 C DA
27 E DA 28 E DA 29 E
12 1.28 1.34 83.6 -0.62 -0.38 12.8 87 3 5 11 9 2 0 0  DT 7 C DA 8 C DC 17 C DA 20 E DT 21 E
13 2.75 2.75 103.8 -1.33 -0.65 15.0 85 4 5 6 1 1 0 0  DT 7 C DA 8 C DA 15 C DT 21 E DA 22 E DA 30 E DT
31 E DA 24 G DT 25 G DA 26 G DA 27 G DG 10 I DT
11 I DA 12 I
14 1.57 2.54 114.8 -1.06 -0.57 13.1 85 5 5 9 2 2 1 0  DC 17 G DT 18 G DG 19 G DA 20 G DT 21 G DT 7 I DC
17 I DT 18 I DG 19 I DA 20 I
15 1.21 1.39 121.1 -0.91 -0.50 12.2 83 6 2 6 3 2 1 0  DA 24 G DT 25 G DA 26 G DA 27 G DA 28 G DA 29 G D
A 30 G DT 7 I DA 8 I DT 9 I DG 10 I DT 11 I DA 12
I

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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